Protein Alignment Rab1 and rab-3

DIOPT Version :9

• Sequence 1: NP_732610.1
• Gene: Rab1 / 42524
• FlyBaseID: FBgn0285937
• Length: 205
• Species: Drosophila melanogaster
• Sequence 2: NP_001021973.1
• Gene: rab-3 / 173971
• WormBaseID: WBGene00004267
• Length: 233
• Species: Caenorhabditis elegans
• Alignment Length: 158
• Identity: 82/158 - (51%)
• Similarity: 119/158 - (75%)
• Gaps: 0/158 - (0%)

  Fly     8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
            :||:||||:||:|.|||:..|.|:.||::|.:::||:|:|||::|:....|.:||||||||||||
 Worm    33 FDYMFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQER 97

  Fly    73 FRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHT 137
            :||||::|||||.|.|::||.|::||||:|:.|..:|:.|:.||...:|||||.|:.:::||...
 Worm    98 YRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMD 162

  Fly   138 TAAEYAAQLGIPFLETSAKSATNVEQAF 165
            ...:.|.|||:.|.|||||...||:..|
 Worm   163 RGRQLADQLGLEFFETSAKENINVKAVF 190

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rab1	NP_732610.1	Rab1_Ypt1	10..175	CDD:206661	81/156 (52%)
rab-3	NP_001021973.1	Rab3	36..200	CDD:206657	80/155 (52%)
		RAB	37..197	CDD:197555	80/154 (52%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910