DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab1 and rab10

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:XP_031757371.1 Gene:rab10 / 100145267 XenbaseID:XB-GENE-5947409 Length:200 Species:Xenopus tropicalis


Alignment Length:200 Identity:110/200 - (55%)
Similarity:143/200 - (71%) Gaps:7/200 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
            ||.||||||||||||||:|:|.||:||.:..::|||||:||||:|:||.||.|||||||||||||
 Frog     6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQER 70

  Fly    73 FRTITSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHT 137
            |.|||:||||||.||::|||.|:.:||.|:.:||..|:.:|.|:|.::|:|||.|:..|:||...
 Frog    71 FHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKA 135

  Fly   138 TAAEYAAQLGIPFLETSAKSATNVEQAFMTMAAEI--KNRVGPPSSATDNASKVKIDQGRPVENT 200
            ...:.|.:.||.|.|||||:..|:|:||:|:|.:|  |..|..|     |:..|.|..|..|...
 Frog   136 KGEQIAREHGIRFFETSAKANVNIEKAFLTLAEDILRKTPVKEP-----NSENVDISSGGGVTGW 195

  Fly   201 KSGCC 205
            ||.||
 Frog   196 KSKCC 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 97/166 (58%)
rab10XP_031757371.1 Rab8_Rab10_Rab13_like 7..173 CDD:206659 97/165 (59%)

Return to query results.
Submit another query.