DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab1 and rab6b

DIOPT Version :10

Sequence 1:NP_732610.1 Gene:Rab1 / 42524 FlyBaseID:FBgn0285937 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_001090835.1 Gene:rab6b / 100038231 XenbaseID:XB-GENE-493829 Length:208 Species:Xenopus tropicalis


Alignment Length:193 Identity:70/193 - (36%)
Similarity:119/193 - (61%) Gaps:0/193 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 76
            |||:.:|:..|||:.|:.||..|::..:|.:|||:||..:|:.|:.:|::||:||||||||||::
 Frog    14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 78

  Fly    77 TSSYYRGAHGIIVVYDCTDQESFNNVKQWLEEIERYACENVNKLLVGNKSDLTTKKVVDHTTAAE 141
            ..||.|.:...:||||.|:..||:...:|::::......:|..:|||||:||..|:.:......:
 Frog    79 IPSYIRDSTVAVVVYDITNLNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEAGEQ 143

  Fly   142 YAAQLGIPFLETSAKSATNVEQAFMTMAAEIKNRVGPPSSATDNASKVKIDQGRPVENTKSGC 204
            .|.:|.:.|:|||||:..||:|.|..:|:.:.........:.|....:|:|:.:..:...:||
 Frog   144 KAKELNVMFIETSAKTGYNVKQLFRRVASALPGMECSEEKSKDGMIDIKLDKPQEPQVADAGC 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab1NP_732610.1 Rab1_Ypt1 10..175 CDD:206661 65/162 (40%)
rab6bNP_001090835.1 Rab6 14..174 CDD:206654 65/159 (41%)

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