DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ETHR and nmur-3

DIOPT Version :9

Sequence 1:NP_001287439.1 Gene:ETHR / 42523 FlyBaseID:FBgn0038874 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_001024524.1 Gene:nmur-3 / 184090 WormBaseID:WBGene00017176 Length:445 Species:Caenorhabditis elegans


Alignment Length:374 Identity:94/374 - (25%)
Similarity:158/374 - (42%) Gaps:96/374 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 TAMFFCIVIMLLGVVGNVMVPIVIVKTKDMRNSTNIFLTNLSIADLLVLLVCTPTVLVEV-NTRP 75
            |.:|  :.:.|:|::||::..|||.||..:.:.||.||.||:.:|..:::|.....||.: |...
 Worm    79 TLIF--VFVGLVGLIGNLLTVIVIFKTNSLHSHTNYFLANLATSDFCLIVVGVSFDLVNIWNDEE 141

  Fly    76 ETWVLGHEMCKAV-PFVELTVAHASVLTILAISFERYYAICEPLKAGYVCTKGRAILICVLAWGI 139
            ...:.|:  |... .|:.| ...||:|||:.::.||:.|||.|.....:..:.|.....:|.|.:
 Worm   142 PLDIFGY--CSLTSTFISL-FTFASILTIVLLTAERFTAICYPFSHRTIFDEKRVKRFILLIWFV 203

  Fly   140 AALFTSPILWVAEY--KLAEYIDG-----SSVAVCLTQAISDWTLAF-FLMTISVFFVVPFVTLV 196
            |.|   |.:::...  ::::...|     :.:..|......|....: |...|::.||:|...::
 Worm   204 ALL---PSIFIGSMFKRVSQDFCGFNRQMTYIGRCDLVTSPDSFFRYPFESAITITFVLPLFFII 265

  Fly   197 VLY----GI------------------IARNLVSNRAAM-------------------------- 213
            ..|    |.                  :..|.:||...:                          
 Worm   266 YCYFRILGTRHFLCITVNLSYTSNIFPVTLNEMSNSTHVHTPVGTARSDSGAFPFPHTSNNSNTQ 330

  Fly   214 -----LRARPTKPELSLKARKQVVLMLGAVVLSFFVCLLPFRVLTLWIILSTDQTLHDLGLVRYY 273
                 :..:..:|..|.:|:|.|:.||..|...||||.||:....|              :|:|.
 Worm   331 SFPLTVHTKNVQPPRSQQAQKMVIKMLVTVTAVFFVCYLPYHAQRL--------------IVKYN 381

  Fly   274 S----------LLY-FCRIMLYLNSAMNPILYNLMSTKFRRGFKRLCQD 311
            |          ||| ...|:.|:::::|||.|||||.:||.|||:|.:|
 Worm   382 SKDCSNSDFCKLLYPIAGILQYISASLNPIFYNLMSVRFRNGFKKLIKD 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ETHRNP_001287439.1 7tm_4 18..>143 CDD:304433 39/126 (31%)
7tm_1 27..294 CDD:278431 78/340 (23%)
7tm_4 <102..307 CDD:304433 62/276 (22%)
nmur-3NP_001024524.1 7tmA_NTSR-like 76..424 CDD:320110 89/366 (24%)
TM helix 1 78..102 CDD:320110 9/24 (38%)
TM helix 2 111..133 CDD:320110 7/21 (33%)
TM helix 3 150..172 CDD:320110 7/22 (32%)
TM helix 4 195..211 CDD:320110 5/18 (28%)
TM helix 5 246..269 CDD:320110 5/22 (23%)
TM helix 6 351..376 CDD:320110 11/24 (46%)
TM helix 7 392..417 CDD:320110 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5416
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.