DRSC/TRiP Functional Genomics Resources

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Protein Alignment ETHR and trhr-1

DIOPT Version :9

Sequence 1:NP_001287439.1 Gene:ETHR / 42523 FlyBaseID:FBgn0038874 Length:471 Species:Drosophila melanogaster
Sequence 2:NP_491990.1 Gene:trhr-1 / 183056 WormBaseID:WBGene00016265 Length:395 Species:Caenorhabditis elegans


Alignment Length:387 Identity:97/387 - (25%)
Similarity:169/387 - (43%) Gaps:65/387 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 TAMFFCIVIMLLGVVGNVMVPIVIVKTKDMRNSTNIFLTNLSIADLLVLLVCTPTVLVEVNTRPE 76
            |..|....|.::||:||::|..|::|.:.|:..||.:|.:|:.:|.|......|..::.:....:
 Worm    34 TLAFVFSAISVIGVLGNLLVITVVLKVRGMKTPTNCYLVSLAASDTLFFFASMPHEMMYLLGPND 98

  Fly    77 TWVLGHEMCKAVPFVELTVAHASVLTILAISFERYYAICEPLKAGYVCTKGRAILICVLAWGIAA 141
            .::.|...|..:.::.....:.|.|:|||.:.||||.||.|.||..:||..||..|....|..:.
 Worm    99 HYLFGSLGCVLLTYLPYLAMNTSSLSILAFTIERYYGICNPYKARTMCTVKRATCIICGIWIFSM 163

  Fly   142 LFTSPILWVAEYKLAEYIDGSSVAVCLTQAISDWTLAFFLMTISVFFVVPFVTLVVLYGIIARNL 206
            |:.|  .|:....|.:...|:|.:..|.:....:.:. ||:...:::|:|.:..:::|..|...|
 Worm   164 LYHS--YWLFLATLIKDDIGTSCSFRLERNSHAYKIV-FLLDFVLWYVLPIMCDIIIYAKIGITL 225

  Fly   207 --------------VSNRAAMLRARPTKPEL---------------SLKARKQVVLMLGAVVLSF 242
                          :.|...:.:::.:...:               |.|.|.|||.||..||..|
 Worm   226 SQCGDKIKKSVKPKIPNEVIVEKSKTSSTSMGHYSGRDSHISGKRNSAKGRNQVVKMLAIVVAVF 290

  Fly   243 FVCLLPFRVLTLWIILSTDQTLHDLGLVRYYS-----LLYFCRIMLYLNSAMNPILYNLMSTKFR 302
            .||.||:|.:.::....:|..         ||     .:...:.::::|.|:|||||||||.:||
 Worm   291 AVCWLPYRGMVVYNSFVSDPK---------YSWSPDWYINLSKTLVFINCAINPILYNLMSARFR 346

  Fly   303 RGFKRLCQDAGRLLLELVTLGRRKEDSSRGRRGTLSLGMGTNTNTNTNSSNATGATSSSILS 364
            ..|:.|             |.:||..      |..|..:......||....::....|.:::
 Worm   347 AAFRSL-------------LSKRKNS------GFKSTALNQRHRLNTMDIMSSAEPKSPLIT 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ETHRNP_001287439.1 7tm_4 18..>143 CDD:304433 38/124 (31%)
7tm_1 27..294 CDD:278431 74/300 (25%)
7tm_4 <102..307 CDD:304433 66/238 (28%)
trhr-1NP_491990.1 7tmA_TRH-R 33..349 CDD:320126 87/326 (27%)
TM helix 1 35..59 CDD:320126 8/23 (35%)
TM helix 2 68..90 CDD:320126 6/21 (29%)
TM helix 3 108..130 CDD:320126 5/21 (24%)
TM helix 4 153..169 CDD:320126 4/17 (24%)
TM helix 5 196..219 CDD:320126 4/23 (17%)
TM helix 6 277..302 CDD:320126 13/24 (54%)
TM helix 7 317..342 CDD:320126 9/24 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BFHW
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5306
OMA 1 1.010 - - QHG46032
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002547
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_104289
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4203
SonicParanoid 1 1.000 - - X1670
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.700

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