DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nelf-A and Nelfa

DIOPT Version :9

Sequence 1:NP_001262804.1 Gene:Nelf-A / 42520 FlyBaseID:FBgn0038872 Length:1264 Species:Drosophila melanogaster
Sequence 2:NP_036044.1 Gene:Nelfa / 24116 MGIID:1346098 Length:530 Species:Mus musculus


Alignment Length:493 Identity:178/493 - (36%)
Similarity:249/493 - (50%) Gaps:77/493 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANVRDSDTSLWLHNKLGTSNDSWINGSICSQLNKEVLRNIKECFPDLQTQVKLKLLLSFLHIPR 65
            ||::|:|||.||||||||.:::.|...||.|.|...|:.||:.||..|.:.|||||||..||:||
Mouse     1 MASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHRLSSAVKLKLLLGTLHLPR 65

  Fly    66 RLVEEWKAELEEVIEVAGLDSELWVSMLAETMKTFPATSSLNTEISDYEDTRPIFIDMVNDLRKL 130
            |.|:|.||.|.::|::|.|||:.||.|:|:.:|:||.|.|||.   |.|:..|...|::.:||:.
Mouse    66 RTVDEMKAALMDIIQLATLDSDPWVLMVADILKSFPDTGSLNL---DLEEQNPNVQDILGELREK 127

  Fly   131 VTKHSDLGMLPLECQYLNKNALISVVGQQPAPVKHFTLKRKPKSAQLRTELLHKSADAQSSLKKA 195
            |::.....||||||||||||||.::.|....|||||.||||||||.||.|||.||.:....||::
Mouse   128 VSECEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQKSTETAQQLKRS 192

  Fly   196 SAPTIPLRSRGMPRKMTDTTPLKGIPSRMPTTGFRSATVP------GNAAQRPNLSRTPAGRKDG 254
            :......:.||:.|||..||||||||.:.|   |||.|.|      ||....|. ||||. :|:.
Mouse   193 AGVPFHAKGRGLLRKMDTTTPLKGIPKQAP---FRSPTTPSVFSPSGNRTPIPP-SRTPL-QKER 252

  Fly   255 GIKLIEFTE-QPLGYAAAKKRKR---EQQLEEQQKKQEQKQQQAAAAAAAAATAAAS-NAGDSSP 314
            |:||::.:| ..:|.....||:|   :.::.|:..|:|...:.|....||...:... .:.:|.|
Mouse   253 GVKLLDISELNTVGAGREAKRRRKTLDTEVVEKPTKEETVVENATPDYAAGLVSTQKLGSLNSEP 317

  Fly   315 TDAATASGGETP-VTPTSAN-NSFEIKMEPQQLNQSAGSLEEPQDDEMSGKANMECDIETPEYAT 377
            |..:|:....|| |.|.|:. .|.|....|.. .:::...|||             ...:|...|
Mouse   318 TLPSTSYLPSTPSVVPASSYIPSSETPPAPPS-REASRPPEEP-------------SAPSPTLPT 368

  Fly   378 ATLDFAQATSTSVADGQPGKPAVETKLKTPRTPKSAAKLNNNNNNNNNNSFNHTPKRIKQEIEIK 442
            .....|...::.::...|. ||..|...||.||.:                              
Mouse   369 QFKQRAPMYNSGLSPATPA-PAAPTSPLTPTTPPA------------------------------ 402

  Fly   443 SEEIIVPASIKLEKIETSPSTQRVSIQQQPPSLVQRTP 480
                :.|.:       .:|....|:.|.|.|:.||:.|
Mouse   403 ----VTPTA-------QTPPVAMVAPQTQAPAPVQQQP 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nelf-ANP_001262804.1 None
NelfaNP_036044.1 NELF-C/D-binding. /evidence=ECO:0000255|PROSITE-ProRule:PRU01183 125..188 37/62 (60%)
RNAPII-binding. /evidence=ECO:0000255|PROSITE-ProRule:PRU01183 189..248 27/62 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..248 18/38 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 266..296 7/29 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 312..409 27/152 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831380
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2CEBP
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0008325
OrthoInspector 1 1.000 - - oto94631
orthoMCL 1 0.900 - - OOG6_106554
Panther 1 1.100 - - LDO PTHR13328
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4683
SonicParanoid 1 1.000 - - X6309
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.730

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