DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd5 and smyd4

DIOPT Version :10

Sequence 1:NP_650955.1 Gene:Smyd5 / 42517 FlyBaseID:FBgn0038869 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_001070062.1 Gene:smyd4 / 767654 ZFINID:ZDB-GENE-060929-248 Length:753 Species:Danio rerio


Alignment Length:451 Identity:92/451 - (20%)
Similarity:150/451 - (33%) Gaps:163/451 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 KGRAMIATKNFAKDEVIFEEEPFVSRQFSWNV----------AYGY--AACDHCMRPLETVLENV 64
            |||.|:..:|....||:.|:|.:.|.....|:          .:|.  ..|.||:          
Zfish   196 KGRHMLVMENKPAGEVVLEDEAYCSVLIPANIFNTGTNKAVETFGTEDRHCHHCL---------- 250

  Fly    65 RRLASDPKVEVPLLQHDPTAQWVAQFTQCPRCK-VRYCSEDCLMEAQKRYHRVAC-MGAFHSDDT 127
                               :|.:: |..||:|. .|||.|.|..:|..::|:..| :||    |.
Zfish   251 -------------------SQSLS-FVPCPKCSYARYCGESCQKDAWDQWHQWECPVGA----DL 291

  Fly   128 HPINVLNETWKKMHYPPETGSIMLIVRLMALYQQ------------STKKEEFLEQLQSFQSLIV 180
            ..|.||             |.:.|.|.|.|...:            :|.|.:...||.       
Zfish   292 LAIGVL-------------GHLALRVVLKAGQTEVQMGIKNTKDHVTTYKNDSPVQLS------- 336

  Fly   181 NREQKIYHKMLGENFEQQMEQLYLAFCNAFTGEEF--------SIFKTPDAFKTLMAI------- 230
                      ||.:..:.::.     .:.|.|..:        .:.:...|.:.||||       
Zfish   337 ----------LGGDCGKSLDH-----TDCFHGSSYMGIYSLLPHVAQHSPASRFLMAITMAVIYG 386

  Fly   231 -----------LGTNSQGIATSVLSQWVAKVSDLPLTD-SEKEQLDTVIDGLYA-KVGEFAGEFL 282
                       :....:|:..|    |..::|.|..|. ....||......:.| :|.|.:|..:
Zfish   387 KLQGGPPPNKWMSFKDEGVKAS----WQPEMSMLGATALRHMMQLRCNAQAITAVRVKEESGMAV 447

  Fly   283 NNE-----GSGLYLLQSKINHSCVPNACSTF-------PY-----------------SNDIVVLK 318
            .:.     .:.::.:.|.:||||.||...:|       |:                 |...|.::
Zfish   448 QSSSEIRIATAIFPVLSLLNHSCSPNTSISFTTGFQPDPHNQLGCSEGHFDHPKGSRSGVTVTVR 512

  Fly   319 ALAPIQQGEEICISYLDECMLERSR---HSRHKVLRENYVFICQCPKCRAQASDPDETSED 376
            |...:..|:||...|..    .|||   ..|.::|.|.|.|.|.|..|:...|:....:::
Zfish   513 ASKDLTAGQEILHCYGP----HRSRMEVKERQRLLLEQYFFQCVCQACQRDLSEGSPNAKE 569

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd5NP_650955.1 SET_SMYD5 3..366 CDD:380919 91/439 (21%)
zf-MYND 87..118 CDD:460312 11/31 (35%)
smyd4NP_001070062.1 NlpI <65..>134 CDD:443815
TPR repeat 68..96 CDD:276809
TPR repeat 101..134 CDD:276809
zf-MYND 246..285 CDD:460312 15/68 (22%)
SET_SMYD4 <352..556 CDD:380934 44/211 (21%)
TPR_12 621..683 CDD:315987
Blue background indicates that the domain is not in the aligned region.

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