DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd5 and smyd1b

DIOPT Version :10

Sequence 1:NP_650955.1 Gene:Smyd5 / 42517 FlyBaseID:FBgn0038869 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_001034725.1 Gene:smyd1b / 569027 ZFINID:ZDB-GENE-060522-1 Length:486 Species:Danio rerio


Alignment Length:397 Identity:77/397 - (19%)
Similarity:128/397 - (32%) Gaps:145/397 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNNFEIRELPGKGRAMIATKNFAKDEVIFEEEPFVSRQFSWNVAYGYAACDHCMRPLETVLENVR 65
            |...|:.:.|||||.:.|||.....:|:|.|.||.|..|.   :...:.|..|.|..|       
Zfish     1 MEFVEVFDSPGKGRGLRATKEAWAGDVLFAEPPFASVVFD---SQASSICHSCFRRQE------- 55

  Fly    66 RLASDPKVEVPLLQHDPTAQWVAQFTQCPRCK-VRYCSEDCLMEAQKRYHRVACMGAFHSDDTHP 129
                                   :..:|.:|: .:||.:.| ..|....|::.|...        
Zfish    56 -----------------------KLQRCGQCRFAQYCDKTC-QRAGWEEHKLECAAI-------- 88

  Fly   130 INVLNETWKKMHYPPETGSIMLIVRLM-ALYQQSTKKEEFLEQLQSFQSLIVNREQKIYHKMLGE 193
                     |.:..|.:.::.|..|:: .:.:|.:                          ::.:
Zfish    89 ---------KTYGKPPSENVRLAARILWRMDKQGS--------------------------VVSD 118

  Fly   194 NFEQQMEQLYLAFCNAFTGEEFSIFKT--------------PDAFKTLMAILGT-NSQGIATSVL 243
            |....:|.|....|: .:.::...||.              |....::..|||. |..|...   
Zfish   119 NQLTTLEDLEDHICD-ISEDDLKDFKVDIHNFLDYWPRNSKPHTVDSVSHILGVINCNGFMV--- 179

  Fly   244 SQWVAKVSDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSCVPN----- 303
                          |::..|..|                   |.||:.....:||.|.||     
Zfish   180 --------------SDQRGLQAV-------------------GVGLFPNLCLVNHDCWPNCTVIL 211

  Fly   304 ------ACSTFPYSNDIVVLKALAPIQQGEEICISYLDECMLERSRHSRHKVLRENYVFICQCPK 362
                  |..|..:|...:.|:||..|..|||:.::|:|...:..   .|.::|::.|.|.|.|..
Zfish   212 NNGNQSAIDTVFHSQKRIELRALGKISAGEEVTVAYVDYLNVSA---DRQRLLKQQYFFDCTCKH 273

  Fly   363 CRAQASD 369
            |..:..|
Zfish   274 CTEKIKD 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd5NP_650955.1 SET_SMYD5 3..366 CDD:380919 75/390 (19%)
zf-MYND 87..118 CDD:460312 7/31 (23%)
smyd1bNP_001034725.1 SET_SMYD1 2..276 CDD:380924 75/390 (19%)
zf-MYND 47..85 CDD:460312 11/68 (16%)

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