DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd5 and SmydA-2

DIOPT Version :10

Sequence 1:NP_650955.1 Gene:Smyd5 / 42517 FlyBaseID:FBgn0038869 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_649084.1 Gene:SmydA-2 / 40075 FlyBaseID:FBgn0036839 Length:530 Species:Drosophila melanogaster


Alignment Length:384 Identity:85/384 - (22%)
Similarity:131/384 - (34%) Gaps:124/384 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 FEIRELPGKGRAMIATKNFAKDEVIFEEEPFVSRQFSWNVAYGYAACDHCMRPLETVLENVRRLA 68
            |||......||.:.||::....|.|.:|.|.|   ....|| ....|..|.|.|         ||
  Fly    49 FEIATNEVLGRHLRATRDIKIGEQILKEAPLV---LGPKVA-SAPLCLGCHRNL---------LA 100

  Fly    69 -SDPKVEVPLLQHDPTAQWVAQFTQCPRCKVRYCSEDCLMEAQKRYHRVACMGAFHSDDTHPINV 132
             ..|:               ..:.:|..|....|.::|   ....:|:..|.....|:....||.
  Fly   101 PGKPR---------------GNYHKCSSCSWPLCGKEC---EDSVHHKAECQLMSGSNFQSKINY 147

  Fly   133 L--NETWKKMHYPPETGSIMLIVRLMALYQQSTKKEEFLEQLQSFQSLIVNREQKIYHKMLGENF 195
            :  .|..|:..|     .:::::|.|.|  :....:.||               |:|:  |.::.
  Fly   148 VPGEEERKESAY-----CVIMLLRCMHL--KDKDPDAFL---------------KLYN--LEDHL 188

  Fly   196 EQQME-QLY-------LAFCNAFTG----EEFSIFKTPDAFKTLMAILGTNSQGIATSVLSQWVA 248
            ::::| .||       :.|.....|    .|..|.:       :.|||.||:..:.         
  Fly   189 KERLETPLYQVLRANLITFIKTVLGMKDWPEMDILR-------IAAILDTNTFEVR--------- 237

  Fly   249 KVSDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSCVPNACSTFPYSND 313
                   ...|:.::                       ..||...:.|:|.||||....|....:
  Fly   238 -------QPRERRKI-----------------------RALYPGAAMISHDCVPNMRHRFDDDMN 272

  Fly   314 IVVLKALAPIQQGEEICISYLDECMLERSRHSRHKVLRENYVFICQCPKCRAQASDPDE 372
            ||.| |...|.:||.:.|||....   ||...|...||:...|.|.|.:|:    ||:|
  Fly   273 IVFL-AKRKIAKGEILSISYTQPL---RSTIQRRVHLRQAKCFDCSCARCQ----DPEE 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd5NP_650955.1 SET_SMYD5 3..366 CDD:380919 82/376 (22%)
zf-MYND 87..118 CDD:460312 5/30 (17%)
SmydA-2NP_649084.1 zf-MYND 9..46 CDD:460312
SET_SMYD <227..318 CDD:380997 33/133 (25%)
Blue background indicates that the domain is not in the aligned region.

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