DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd5 and SmydA-3

DIOPT Version :9

Sequence 1:NP_650955.1 Gene:Smyd5 / 42517 FlyBaseID:FBgn0038869 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_001260366.1 Gene:SmydA-3 / 34502 FlyBaseID:FBgn0262599 Length:507 Species:Drosophila melanogaster


Alignment Length:403 Identity:78/403 - (19%)
Similarity:119/403 - (29%) Gaps:158/403 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNNFEIRELPGKGRAMIATKNFAKDEVIFEEEPF-VSRQFSWNVAYGYAACDHCMRPLETVLENV 64
            :|...::..|..||.::|........::.||.|| |..:.:     |...|..|..|        
  Fly     9 VNRTAVQWSPVCGRYLVAKGAIRGHGLLIEELPFAVGPKCN-----GPVVCLGCYEP-------- 60

  Fly    65 RRLASDPKVEVPLLQHDPTAQWVAQFTQCPRCKVRYCSEDCLMEAQKRYHRVAC----------- 118
               ..||:.|:                 |..|....|.| |..:|...:.|:.|           
  Fly    61 ---NPDPEEEL-----------------CSECGWPLCVE-CAQQADNAHFRLECSQLKDARARFF 104

  Fly   119 ---MGAFHS---DDTHPINVL------NETWKKMHYPPETGSIMLIVRLMALYQQSTKKEEFLEQ 171
               .|:.|.   |...|:.||      .|.|.....|.|                 ..|||....
  Fly   105 RLPSGSRHCPQLDCIMPLRVLLAKEANPERWDNEVAPME-----------------HHKEERQRD 152

  Fly   172 LQSFQSLIVNREQKIYHK-MLGENFEQQ--MEQLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGT 233
            ...:.:..||..|.:... .|...|.::  |:.:.:...|||..      ::|..:         
  Fly   153 ADVWHADRVNIAQYLRGPCQLANRFSEELIMQVVGVLEVNAFEA------RSPKGY--------- 202

  Fly   234 NSQGIATSVLSQWVAKVSDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINH 298
                                ||.            .|:...|..|                   |
  Fly   203 --------------------PLR------------CLFPYTGILA-------------------H 216

  Fly   299 SCVPNAC-STFPYSNDIVVLKALAPIQQGEEICISY---LDECMLERSRHSRHKVLRENYVFICQ 359
            :||||.. |.:|.....:.|:|:..:::|:.:..||   ||      ....|.|.|::...|.||
  Fly   217 NCVPNTSRSIYPSEGYKIRLRAMVDLEEGQPLHHSYTYTLD------GTAQRQKHLKQGKFFTCQ 275

  Fly   360 CPKCRAQASDPDE 372
            |.:|    .||.|
  Fly   276 CERC----LDPTE 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd5NP_650955.1 zf-MYND 87..118 CDD:280009 7/30 (23%)
SET <296..333 CDD:279228 10/37 (27%)
SmydA-3NP_001260366.1 SET <207..252 CDD:250181 13/63 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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