DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd5 and set-14

DIOPT Version :9

Sequence 1:NP_650955.1 Gene:Smyd5 / 42517 FlyBaseID:FBgn0038869 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_496323.1 Gene:set-14 / 174662 WormBaseID:WBGene00011068 Length:429 Species:Caenorhabditis elegans


Alignment Length:347 Identity:75/347 - (21%)
Similarity:118/347 - (34%) Gaps:118/347 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 PLETVLENVRRLASDPKVEVPLLQHDPTAQW-------VAQFTQCPRC-KVRYCSEDCLMEAQKR 112
            |.:.:.|||...|         |..|....:       :|:..:|..| ::.|||::| ..|..:
 Worm     4 PPDALHENVYAFA---------LARDQVESYCNQCLTSMAELKKCSACRRLAYCSQEC-QRADWK 58

  Fly   113 YHRVACMGAFHSDDTHPINVLNETWKKMHYPPETGSIMLIVRLMALYQQSTKKEEFLEQLQSFQS 177
            .|:|.|...                 |.|......||.|::|:.....::...|     ::::  
 Worm    59 LHKVECKAI-----------------KTHNEVANDSIRLVMRIAGKLSRNEDGE-----IEAY-- 99

  Fly   178 LIVNREQKIYHKMLGENFEQQME---QLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGTNSQGIA 239
                     |...:..|| |.:|   ..|.|...:|..|.|.....|...:.|:.::        
 Worm   100 ---------YIPGVARNF-QNLEHHPSSYDADEESFVKEYFQFAIAPHPDRDLIKLI-------- 146

  Fly   240 TSVLSQWVAKVSDLPLTDSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSCVP-- 302
                              .:|..:::.:      ||...|   |..|.||.:..|..||||.|  
 Worm   147 ------------------FQKVSINSFV------VGNSTG---NPIGVGLCIKLSAANHSCKPLT 184

  Fly   303 NACSTFPYSNDIVVLKALAPIQQG-----EEICISYLDECMLERSRHSRHKVLRENYVFICQCPK 362
            ..|    |.|...:   |.|:...     |..|.||:||.|   .|..|...|::.|.|:|||..
 Worm   185 RVC----YRNRTAM---LVPVSSELPSTLEGACHSYIDELM---PRDMRRDTLKKKYKFLCQCDG 239

  Fly   363 CRAQASDPDETSEDDDDDDEMD 384
            |.           |:|.:..|:
 Worm   240 CL-----------DEDRNARME 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd5NP_650955.1 zf-MYND 87..118 CDD:280009 10/31 (32%)
SET <296..333 CDD:279228 12/43 (28%)
set-14NP_496323.1 zf-MYND 26..64 CDD:280009 10/38 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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