DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd5 and Smyd1

DIOPT Version :9

Sequence 1:NP_650955.1 Gene:Smyd5 / 42517 FlyBaseID:FBgn0038869 Length:393 Species:Drosophila melanogaster
Sequence 2:NP_001153599.1 Gene:Smyd1 / 12180 MGIID:104790 Length:490 Species:Mus musculus


Alignment Length:399 Identity:83/399 - (20%)
Similarity:131/399 - (32%) Gaps:128/399 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNNFEIRELPGKGRAMIATKNFAKDEVIFEEEPFVSRQFSWNVAYGYAACDHCMRPLETVLENVR 65
            |.|.|:....||||.:.|||.|...:|||.|..:.:..|...:.:   .|..|.:..|       
Mouse     6 MENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINF---VCHTCFKRQE------- 60

  Fly    66 RLASDPKVEVPLLQHDPTAQWVAQFTQCPRCK-VRYCSEDCLMEAQKRYHRVACMGAFHSDDTHP 129
                                   :..:|.:|| ..||...|..:|... |:..|...        
Mouse    61 -----------------------KLHRCGQCKFAHYCDRTCQKDAWLN-HKNECAAI-------- 93

  Fly   130 INVLNETWKKMHYPPETGSIMLIVRLM-ALYQQST-KKEEFLEQLQSFQSLIVNREQKIYHKMLG 192
                    ||....|.. :|.|..|:| .:.::.| ..|..|..:...|:.:             
Mouse    94 --------KKYGKVPNE-NIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHV------------- 136

  Fly   193 ENF-EQQMEQLYLAFCNAFTGEEFSIFKTPDAFKTLMAILGTNSQGIATSVLSQWVAKVSDLPLT 256
            |:| |::.::|.:                  ...|.:......||..:...:|.....::....|
Mouse   137 EHFGEEEQKELRV------------------DVDTFLQYWPPQSQQFSMQYISHIFGVINCNGFT 183

  Fly   257 DSEKEQLDTVIDGLYAKVGEFAGEFLNNEGSGLYLLQSKINHSCVPNACSTFPYSNDIVV----- 316
            .|::..|..|..|::..:|                   .:||.|.||....|...|...|     
Mouse   184 LSDQRGLQAVGVGIFPNLG-------------------LVNHDCWPNCTVIFNNGNHEAVKSMFH 229

  Fly   317 ------LKALAPIQQGEEICISYLDECMLERSRHSRHKVLRENYVFICQCPKCR---------AQ 366
                  |:||..|.:|||:.:||:|...|.   ..|.:.|::.|.|.|.|..|:         |.
Mouse   230 TQMRIELRALGKISEGEELTVSYIDFLHLS---EERRRQLKKQYYFDCSCEHCQKGLKDDLFLAA 291

  Fly   367 ASDPDETSE 375
            ..||..:.|
Mouse   292 KEDPKPSQE 300

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Smyd5NP_650955.1 zf-MYND 87..118 CDD:280009 8/31 (26%)
SET <296..333 CDD:279228 15/47 (32%)
Smyd1NP_001153599.1 SET_SMYD1 7..281 CDD:380924 78/377 (21%)
S-adenosyl-L-methionine binding 17..19 1/1 (100%)
zf-MYND 52..90 CDD:396356 11/68 (16%)