DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNF4Agamma and SDS24

DIOPT Version :9

Sequence 1:NP_001163671.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:NP_009773.1 Gene:SDS24 / 852515 SGDID:S000000418 Length:527 Species:Saccharomyces cerevisiae


Alignment Length:420 Identity:79/420 - (18%)
Similarity:153/420 - (36%) Gaps:96/420 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   909 EKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLWDSE 973
            :.:.||.|.|.:..|||            |.|         :.|::||..|:...:.:.|:    
Yeast   106 QHIPLSQLIEQNKLIFV------------PGS---------ISVEEAFNTLIKYHLNSIPV---- 145

  Fly   974 KQQFVGMLT-----ITDFIKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMP---LVSIGPDA 1030
             :.|.|.:.     ..|....|.:.......|.:||.       ....:.:.:|   :|.:.|..
Yeast   146 -ESFPGDMNCFTFDYNDLNSYLLLVLNKITVSNKQLT-------ADCQNGKPVPVGEMVKLTPKN 202

  Fly  1031 SLY--------DAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFL------FLYINELPKPA 1081
            ..|        ..:..::.|.:||:.:.:.....|..||:.:|::::|      |..:..|    
Yeast   203 PFYKLPENESLSTVMGILGSGVHRVAITNEEMTKVKGILSQRRLIKYLWDNARSFTSLEPL---- 263

  Fly  1082 YMQKSLRELKIGTYN----------NIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYA 1136
             :..||::|.||..|          .:.:......:|..|.|....|:|::.::|..|.|:...:
Yeast   264 -LNSSLQDLHIGVLNIQSKPTSRQSRVISIQGEEPLIMGLYKMHVERISSIAVIDKQGNLLGNIS 327

  Fly  1137 KFDVINLAAEKTYNDLDVSLR---------KANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVH 1192
            ..||.::.....|..|..:.|         :..|...:.|. :.......||...:.::|..:.|
Yeast   328 VTDVKHVTRTSQYPLLHKTCRHFISVILNSRGLETGKDSFP-IFHVYPSSSLARTLAKLVATKSH 391

  Fly  1193 RLVVVD--ENRKVIGIISLSDI-----LLYLVLRPSGEGV-----GGSESSLRASDPVLLRKVAE 1245
            ||.:|.  |:.......:|:..     .:....:.|..|.     ..|.:||.:..|::    ..
Yeast   392 RLWIVQPPESSTSASSTNLTAANTAANAVSATAQSSANGATPMSKSSSSTSLNSHSPLM----TA 452

  Fly  1246 VEIPATAAAATTTTPPRSPSAGSGNRSLIE 1275
            :|.|.:..::....||.||::.:...:|.|
Yeast   453 MEDPPSPRSSAIAIPPPSPASSTNTPNLFE 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_001163671.1 CBS_pair_5 941..1069 CDD:239990 23/143 (16%)
CBS 952..1067 CDD:223591 23/130 (18%)
CBS 1023..1141 CDD:223591 28/141 (20%)
CBS_pair_28 1097..1215 CDD:240012 24/133 (18%)
CBS 1097..1213 CDD:223591 24/131 (18%)
SDS24NP_009773.1 CBS 114..247 CDD:223591 29/165 (18%)
CBS_pair_SF 203..331 CDD:417695 25/132 (19%)
CBS repeat 203..279 CDD:341358 17/80 (21%)
CBS repeat 290..331 CDD:341358 8/40 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0517
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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