DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNF4Agamma and CBSX4

DIOPT Version :9

Sequence 1:NP_001163671.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:NP_001319425.1 Gene:CBSX4 / 844349 AraportID:AT1G80090 Length:357 Species:Arabidopsis thaliana


Alignment Length:358 Identity:72/358 - (20%)
Similarity:145/358 - (40%) Gaps:83/358 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   922 QIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPL------W---------- 970
            |.:.:..:| |..||:....:||.......:..|...:|.|.|||.|:      |          
plant     2 QSYSRLMQF-KVKDLMIDKRRLVEVPDNATLGDALNTMVANRVRAVPVAAKPGQWLGAGGSMIVE 65

  Fly   971 -----DSEKQQFVGMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWRSVLHN--QVMPLVSIGP 1028
                 .|.::|::||:|:.|.:.     :.:.:.....|::.......|::.:  :.:.|.|:.|
plant    66 LDKQSGSARKQYIGMVTMLDVVA-----HIAGDDGESGLDKKMAAPVSSIIGHCPEGLSLWSLNP 125

  Fly  1029 DASLYDAIKILIHSRIHRLPV-IDPATGNV-----------LYILTHKRILRFLFLYINELPKPA 1081
            :.|:.|.:::| ...|||:.| :|..|.|:           ..:|:...::.|.|...::|  ..
plant   126 NTSIMDCMEML-SKGIHRVLVPLDSNTENITGPELVESASAYAMLSQMDLISFFFDQSSQL--HG 187

  Fly  1082 YMQKSLRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAE 1146
            .:..::.:|. ..:|.:........:..|::......::|:|:|::.|...|.....|..|....
plant   188 ILSHTVTDLS-AIHNTVLALTSQARVKDAIQCMSIAMLNAVPIVEASGEGEDHKQLVDGKNRRVV 251

  Fly  1147 KTYNDLDV------SLRKANEHRNEW-----FEGVQK--------------------CNLDESLY 1180
            .|::..|:      :||       .|     .|.|:|                    |::..:|.
plant   252 GTFSASDLKGCHLATLR-------SWLPLNALEFVEKIPRTLLFTAATSTPGRELVTCHVTSTLA 309

  Fly  1181 TIMERIVRAEVHRLVVVDENRKVIGIISLSDIL 1213
            .::..:....|||:.|||:|..:.|::||:||:
plant   310 QVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDII 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_001163671.1 CBS_pair_5 941..1069 CDD:239990 32/162 (20%)
CBS 952..1067 CDD:223591 30/149 (20%)
CBS 1023..1141 CDD:223591 26/129 (20%)
CBS_pair_28 1097..1215 CDD:240012 30/148 (20%)
CBS 1097..1213 CDD:223591 29/146 (20%)
CBSX4NP_001319425.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0517
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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