DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNF4Agamma and AT5G50640

DIOPT Version :9

Sequence 1:NP_001163671.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:NP_680412.1 Gene:AT5G50640 / 835133 AraportID:AT5G50640 Length:548 Species:Arabidopsis thaliana


Alignment Length:460 Identity:96/460 - (20%)
Similarity:180/460 - (39%) Gaps:120/460 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1013 RSVLHNQVMPLVSIGPDASLYDAIKILIHSRIHRLPVIDPATGNVLY--ILTHKRILRFLFLYIN 1075
            |:|...::...:::....:|::|.:.:...|:..|.:.|   .|.|.  |||.:.|         
plant    61 RTVKRLRLCKALTVPDSTTLFEACRRMAARRVDALLLTD---SNALLCGILTDRDI--------- 113

  Fly  1076 ELPKPAYMQKSLREL---KIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLV----- 1132
             ..|....|.:|.|.   |:.|.|.:....:|.: :.||:|.|:.:...||:|: :|.::     
plant   114 -ATKVIAKQLNLEETPVSKVMTKNPVFVLSDTIA-VEALQKMVQGKFRHLPVVE-NGEVIALLDI 175

  Fly  1133 -----DIYAKFD-------VINLAAEKTYNDLDVSLRKANEH----RNEWFE-----------GV 1170
                 |..|:.:       .|..|.|....:...|:...|..    |...|:           .|
plant   176 AKCLYDAIARMERSVEKGKAIAAAVEGVEKNWGTSIAGPNTFMETLRERIFKPSLSTIIPENTKV 240

  Fly  1171 QKCNLDESLYTIMERIVRAEVHRLVVVDENRKVIGIISLSDILLYL--------------VLRPS 1221
            .|..|||::..:..::|..:....:|:.|| |::||::..|||:.:              |:.|:
plant   241 LKVGLDETVLGVTMKMVEYQSSAAMVMVEN-KLVGILTSKDILMRVISQNLPQETTTVEKVMTPN 304

  Fly  1222 GEGVGGSESSLRASD----------PVLLRK---VAEVEIPATAAAATTTTPPRSPSAGSGN--- 1270
            .|......:.:.|..          |||.:.   ||.:::.....||.||.   ..:||..|   
plant   305 PESATVDMAIVEALHIMHNGKFLHLPVLDKDGDVVAVIDVIHITHAAVTTA---GSTAGINNETA 366

  Fly  1271 RSLIEDIPEEETAPARSDDADSDNNKSASEDKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQ 1335
            .|:::..  .::|.|.|.:.|.|..:|..|....:::.:.|.:.:..|          :||.:.|
plant   367 NSMMQKF--WDSAMALSPNEDGDETRSEEESMKLSSEIEVTKSFSYPN----------TFAFKLQ 419

  Fly  1336 EEEAADQVERSNCDDDDQPALA---------EIERKNAS--MDDDE---------DDGMSSAVSA 1380
            :::.  ::.|..|:......|.         :||..|..  |.:||         |:.:.:||..
plant   420 DKKG--RMHRFMCETQSLTTLITAILQRMGDDIEPDNLPQIMYEDEDNDKVVLASDNDLGAAVEH 482

  Fly  1381 ASALG 1385
            |.::|
plant   483 AKSIG 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_001163671.1 CBS_pair_5 941..1069 CDD:239990 13/57 (23%)
CBS 952..1067 CDD:223591 12/55 (22%)
CBS 1023..1141 CDD:223591 29/139 (21%)
CBS_pair_28 1097..1215 CDD:240012 33/149 (22%)
CBS 1097..1213 CDD:223591 31/147 (21%)
AT5G50640NP_680412.1 CBS_pair_MUG70_1 70..184 CDD:341417 28/128 (22%)
CBS_pair_MUG70_2 237..353 CDD:341418 26/116 (22%)
PB1_MUG70 414..498 CDD:99730 17/76 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0517
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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