DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment SNF4Agamma and SETH3

DIOPT Version :9

Sequence 1:	NP_001163671.1	Gene:	SNF4Agamma / 42515	FlyBaseID:	FBgn0264357	Length:	1400	Species:	Drosophila melanogaster
Sequence 2:	NP_191029.1	Gene:	SETH3 / 824634	AraportID:	AT3G54690	Length:	350	Species:	Arabidopsis thaliana

Alignment Length:	168	Identity:	36/168 - (21%)
Similarity:	64/168 - (38%)	Gaps:	42/168 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly  1059 YILTHK--RILRFLFLYINELPKPAYMQKSLRELKIGTYNNIETADETTSIITALKKFVERRVSA 1121
            |...|.  ||.:.|...:.:      :.|...||.:        ..|...|:..|.:...:....
plant   208 YAANHPAGRIGKSLIFKVKD------VMKKQEELPV--------CKEGDLIMDQLVELTSKGCGC 258

  Fly  1122 LPLVDSDGRLVDIYAKFDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQKCNL------DESLY 1180
            |.:||...||:..:            |..||..:|:.:.|...:...| :.||.      .|::
plant   259 LLVVDEHSRLIGTF------------TDGDLRRTLKASGEAIFKLSVG-EMCNRKPRTIGPETM- 309

  Fly  1181 TIMERIVRAE-----VHRLVVVDENRKVIGIISLSDIL 1213
             .:|.:.:.|     |..|.||:|:..:|||::|..::
plant   310 -AVEAMKKMESPPSPVQFLPVVNEDNTLIGIVTLHGLV 346

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
SNF4Agamma	NP_001163671.1	CBS_pair_5	941..1069	CDD:239990	4/11 (36%)
		CBS	952..1067	CDD:223591	3/9 (33%)
		CBS	1023..1141	CDD:223591	16/83 (19%)
		CBS_pair_28	1097..1215	CDD:240012	28/128 (22%)
		CBS	1097..1213	CDD:223591	28/126 (22%)
SETH3	NP_191029.1	gutQ	62..350	CDD:183186	36/168 (21%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910