DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNF4Agamma and prkag3

DIOPT Version :9

Sequence 1:NP_001163671.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:NP_001072406.2 Gene:prkag3 / 779860 XenbaseID:XB-GENE-965172 Length:341 Species:Xenopus tropicalis


Alignment Length:318 Identity:169/318 - (53%)
Similarity:235/318 - (73%) Gaps:5/318 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly   906 PFLEKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLW 970
            |..|..:|.    :|:.::::|...:.|||.||||.|||||||.|.:||||.|||.|||||||||
 Frog    22 PMCEAPDLG----EDAGLYMEFMMKNCCYDAIPTSCKLVVFDTTLQIKKAFLALVANGVRAAPLW 82

  Fly   971 DSEKQQFVGMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWRSV-LHNQVMPLVSIGPDASLYD 1034
            ||::..|||||||||||.||..|||:|...:.:|||||::|||.| |.:...||:.|.|..||:.
 Frog    83 DSKQHSFVGMLTITDFINILHRYYKAPLVQIYELEEHKIETWREVYLQSSFKPLIYISPADSLFH 147

  Fly  1035 AIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGTYNNIE 1099
            |:..||.::||||||:||.:||:|:||||||:|:||.|:.:.||:|.::||::.||.|||:.::.
 Frog   148 AVYSLIKNKIHRLPVMDPISGNILHILTHKRLLKFLHLFGDTLPRPRFLQKTILELGIGTFRDVA 212

  Fly  1100 TADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTYNDLDVSLRKANEHRN 1164
            ...:::|:..||:.||||||||||:|:..|::|.:|::||||:|||:|.||:||:|:|.|...|:
 Frog   213 VVQDSSSVYNALEIFVERRVSALPVVNESGQVVGLYSRFDVIHLAAQKIYNNLDISVRDALRLRS 277

  Fly  1165 EWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSG 1222
            ...|||..|...|||..:::||||.::||||:|||:.:..||:||||||..|||.|:|
 Frog   278 LSIEGVLMCYPHESLEVVIDRIVREQIHRLVLVDEDHRPRGIVSLSDILQALVLTPAG 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_001163671.1 CBS_pair_5 941..1069 CDD:239990 80/128 (63%)
CBS 952..1067 CDD:223591 71/115 (62%)
CBS 1023..1141 CDD:223591 58/117 (50%)
CBS_pair_28 1097..1215 CDD:240012 59/117 (50%)
CBS 1097..1213 CDD:223591 57/115 (50%)
prkag3NP_001072406.2 CBS_euAMPK_gamma-like_repeat1 45..181 CDD:341388 86/135 (64%)
CBS repeat 52..125 CDD:341388 50/72 (69%)
CBS repeat 137..181 CDD:341388 24/43 (56%)
CBS_euAMPK_gamma-like_repeat2 207..330 CDD:341399 60/122 (49%)
CBS repeat 208..273 CDD:341399 31/64 (48%)
CBS repeat 284..327 CDD:341399 22/42 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8683
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000896
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X716
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.000

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