DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SNF4Agamma and prkag2a

DIOPT Version :9

Sequence 1:NP_001163671.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:XP_021325888.1 Gene:prkag2a / 570761 ZFINID:ZDB-GENE-060929-160 Length:547 Species:Danio rerio


Alignment Length:525 Identity:248/525 - (47%)
Similarity:325/525 - (61%) Gaps:56/525 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   736 GGAAAAAGQGAAGGAGGLMNSMKV----AMQNFSHRQHPAVTITSADGTQSTAKSKYKDGSAHP- 795
            |.|..|...||..|..|..::...    :...||....|         ..:.|:::...||..| 
Zfish    40 GDAEHACKDGARKGDLGCRSASPTKTFFSRGPFSRPSSP---------MSAPARTRTSPGSPKPI 95

  Fly   796 ---HQGS-DAQYYHTVTAVRPNSSQRS--PMTKVMD--LF-RHRSSSVVSEADKRKARAAAHQQQ 851
               |:.| ......:.|.:..:||:.|  |.|..:.  || |.|.:|.:|.:.....       |
Zfish    96 FSNHESSPKCSRRRSFTGIFRSSSKDSTNPSTSPVSIKLFSRTRKASGISSSPTTPT-------Q 153

  Fly   852 LAVQ-SAHMRRASADLEKRRASVGAAGRGLRGDGTLDPH------------HAAI-LFRDSRGLP 902
            |..| ||.:...|.:....|:|......|       .||            .|.| ..|...|| 
Zfish   154 LTKQTSAFLVEVSRNDTVHRSSSSPLDTG-------QPHSPPTAKPPPCPSSAPISTSRTVHGL- 210

  Fly   903 VADPFLEKVNLSD--LEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVR 965
             ::..|||:::.|  :|..:|.|:::|.:.|||||::|||:|||||||.|.|||||:|||.||||
Zfish   211 -SEDMLEKLDIEDEAVEHSESDIYMRFMKSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVR 274

  Fly   966 AAPLWDSEKQQFVGMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWRSV-LHNQVMPLVSIGPD 1029
            |||||:::||.|||||||||||.||..|||||...:.:|||||::|||.: |.....|||:|.||
Zfish   275 AAPLWETKKQSFVGMLTITDFINILHRYYKSPMVQIYELEEHKIETWRELYLQETFKPLVNISPD 339

  Fly  1030 ASLYDAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGT 1094
            ||::||:..||.::|||||||||.:||.||||||||||:||.|::.|:||||:|:::|.||.|||
Zfish   340 ASIFDAVYSLIKNKIHRLPVIDPVSGNALYILTHKRILKFLQLFVCEMPKPAFMKQTLEELSIGT 404

  Fly  1095 YNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTYNDLDVSLRKA 1159
            ||||......|.||.||..||:|||||||:||..|::||||:||||||||||||||:||:|:.:|
Zfish   405 YNNIAFIHPDTPIIKALSIFVDRRVSALPVVDESGKVVDIYSKFDVINLAAEKTYNNLDISVTQA 469

  Fly  1160 NEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSGEG 1224
            ..||:::||||.|||..|:|.||::|||:||||||||||||..::||:||||||..|||.|:...
Zfish   470 LMHRSQYFEGVMKCNRLETLETIVDRIVKAEVHRLVVVDENGSIVGIVSLSDILQALVLNPAETD 534

  Fly  1225 VGGSE 1229
            |.|.|
Zfish   535 VIGFE 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_001163671.1 CBS_pair_5 941..1069 CDD:239990 87/128 (68%)
CBS 952..1067 CDD:223591 77/115 (67%)
CBS 1023..1141 CDD:223591 75/117 (64%)
CBS_pair_28 1097..1215 CDD:240012 77/117 (66%)
CBS 1097..1213 CDD:223591 75/115 (65%)
prkag2aXP_021325888.1 Retinal <45..160 CDD:330657 29/130 (22%)
CBS_pair_5 250..379 CDD:239990 87/128 (68%)
CBS_pair_28 407..525 CDD:240012 77/117 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 79 1.000 Domainoid score I8598
eggNOG 1 0.900 - - E1_COG0517
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H135205
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000896
OrthoInspector 1 1.000 - - otm25595
orthoMCL 1 0.900 - - OOG6_101734
Panther 1 1.100 - - O PTHR13780
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4230
SonicParanoid 1 1.000 - - X716
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1110.800

Return to query results.
Submit another query.