DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SNF4Agamma and clcn7

DIOPT Version :9

Sequence 1:NP_001163671.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:NP_001071005.1 Gene:clcn7 / 553351 ZFINID:ZDB-GENE-061103-196 Length:795 Species:Danio rerio


Alignment Length:389 Identity:68/389 - (17%)
Similarity:119/389 - (30%) Gaps:154/389 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   957 YALVYNGVRAAPLWDSEKQQFVGMLTITD--FIKILQMYYKSPNASMEQLEEHKLDTWR------ 1013
            :|::|......||.....:::...|...|  :..:...::.:|..|:..|..:...|:.      
Zfish   416 FAMIYFSTECQPLGPDHTEEYPLQLFCADGEYNAMATAFFNTPERSVRSLFHNPPGTYNPMTLGV 480

  Fly  1014 ------------------------------------SVLHNQVMPLVSIGPDASLYDAIKI---- 1038
                                                .:|.:.:....||..|...|..|..    
Zfish   481 FTLAYFLLAVWTYGLTVSAGVFIPSLLIGAAWGRLFGILLSFITTSKSIWADPGKYALIGAAAQL 545

  Fly  1039 --LIHSRIHRLPVIDPATGNVLY-------ILT---------------HKRILRFLFLYINELPK 1079
              ::...:....::..|||||.|       ::|               |.::....||:....|.
Zfish   546 GGIVRMTLSLTVILVEATGNVTYGFPIMLVLMTAKIVGDYFVEGLYDIHIKLQSVPFLHWEAPPT 610

  Fly  1080 PAYMQKSLREL------------KIGT-----------YNNIETADETTSI-------------- 1107
            ..::  :.||:            |:||           :|........|.|              
Zfish   611 SHWL--TAREVMSSQVTCFNRIEKVGTIVDVLSNTSTNHNGFPVVTHVTEIDEPSKLCGLVLRSQ 673

  Fly  1108 -ITALKK--FVER---RVSALPLVDSDGRLVDIYAKFDVINLAAEKTYNDLDVSLRKANEHRNEW 1166
             |..||.  ||||   |.|...|...|.|  |.|.:|..|.            |:..:.:.|   
Zfish   674 LIVLLKHKVFVERAFSRFSQRKLQLKDFR--DAYPRFPPIQ------------SIHVSQDER--- 721

  Fly  1167 FEGVQKCNLD------ESLYTIME--------RIVRA-EVHRLVVVDENRKVIGIISLSDILLY 1215
                 :|.:|      .:.||:.:        ::.|| .:..|||||...:|:|:::..|:..|
Zfish   722 -----ECMMDLTEFMNPTPYTVPQETSLPRVFKLFRALGLRHLVVVDNENRVVGLVTRKDLARY 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_001163671.1 CBS_pair_5 941..1069 CDD:239990 24/183 (13%)
CBS 952..1067 CDD:223591 24/181 (13%)
CBS 1023..1141 CDD:223591 39/188 (21%)
CBS_pair_28 1097..1215 CDD:240012 34/152 (22%)
CBS 1097..1213 CDD:223591 34/150 (23%)
clcn7NP_001071005.1 ClC_6_like 82..604 CDD:239657 25/187 (13%)
Voltage_CLC 172..584 CDD:279048 23/167 (14%)
CBS_pair_EriC_assoc_euk_bac 625..780 CDD:239964 38/176 (22%)
CBS 729..>780 CDD:223591 12/50 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.