DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SNF4Agamma and prkag3a

DIOPT Version :10

Sequence 1:NP_732598.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:XP_692594.4 Gene:prkag3a / 553319 ZFINID:ZDB-GENE-091204-419 Length:344 Species:Danio rerio


Alignment Length:345 Identity:181/345 - (52%)
Similarity:244/345 - (70%) Gaps:23/345 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   884 GTLDPHHAAILFRDSRGLPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDT 948
            ||.|..|...|                ||::|| :.:::.::.|.:.|.|||.||||.|||:|||
Zfish    16 GTQDDCHEDCL----------------VNITDL-DPNAETYMNFMKKHCCYDAIPTSCKLVIFDT 63

  Fly   949 QLLVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWR 1013
            .|.|||||:|||.||:|||||||.:.|:|||||||||||.||..||:||...:.:|||||::|||
Zfish    64 TLQVKKAFFALVANGLRAAPLWDHKLQRFVGMLTITDFINILHRYYRSPMVQIYELEEHKIETWR 128

  Fly  1014 S------VLHNQVMPLVSIGPDASLYDAIKILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFL 1072
            .      .|..|...|:||.|||||:||:..|:..:|||||||||.:||||:||||||||:||.:
Zfish   129 GDSFQNVYLQYQDQCLISITPDASLFDAVYSLLKHKIHRLPVIDPESGNVLHILTHKRILKFLHI 193

  Fly  1073 YINELPKPAYMQKSLRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYAK 1137
            :...:|||.:::..::|..|||:.::.|..:|.::..||..||||||||||:||.||::|.:|::
Zfish   194 FGTTVPKPRFLKMQIKEAGIGTFRDVATVSQTATVYDALSVFVERRVSALPVVDDDGKVVALYSR 258

  Fly  1138 FDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERIVRAEVHRLVVVDENRK 1202
            ||||||||:||||:|.:|:::|...|..:.|||.||..||:|.|:::|||:|||||||:||....
Zfish   259 FDVINLAAQKTYNNLSMSMQEAVRRRRCYVEGVIKCYPDETLETVIDRIVKAEVHRLVLVDREDV 323

  Fly  1203 VIGIISLSDILLYLVLRPSG 1222
            |.|||||||:|..:||.|:|
Zfish   324 VRGIISLSDLLQAIVLSPAG 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_732598.1 CBS_euAMPK_gamma-like_repeat1 932..1068 CDD:341388 90/141 (64%)
CBS repeat 940..1013 CDD:341388 49/72 (68%)
CBS repeat 1024..1068 CDD:341388 30/43 (70%)
CBS_euAMPK_gamma-like_repeat2 1094..1217 CDD:341399 67/122 (55%)
CBS repeat 1095..1160 CDD:341399 34/64 (53%)
CBS repeat 1171..1214 CDD:341399 26/42 (62%)
prkag3aXP_692594.4 CBS_euAMPK_gamma-like_repeat1 48..189 CDD:341388 90/140 (64%)
CBS repeat 55..128 CDD:341388 49/72 (68%)
CBS repeat 145..189 CDD:341388 30/43 (70%)
CBS_euAMPK_gamma-like_repeat2 215..338 CDD:341399 67/122 (55%)
CBS repeat 216..281 CDD:341399 34/64 (53%)
CBS repeat 292..335 CDD:341399 26/42 (62%)

Return to query results.
Submit another query.