DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNF4Agamma and aakg-5

DIOPT Version :9

Sequence 1:NP_001163671.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:NP_871971.1 Gene:aakg-5 / 174556 WormBaseID:WBGene00011276 Length:488 Species:Caenorhabditis elegans


Alignment Length:490 Identity:100/490 - (20%)
Similarity:204/490 - (41%) Gaps:105/490 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   811 RPNSSQRSP--MTKVMDLFRHRSSSVVSEADKRKARAAAHQQQLA---VQSAHMRRASADLEKRR 870
            |.::|.|.|  :::|.||...|:.|:.:...:|.  .|..:.|:|   |::.:      ||..:.
 Worm    66 RNSTSGRRPSFLSQVRDLIHPRTGSLGASMFRRP--EATRRVQVAECNVEAVY------DLRDKH 122

  Fly   871 ASVGAAGRGLRGDGTLDPHHAAILFRDSRGLPVA-----------DPFLEKVNLSDLEEDDSQIF 924
            |.......|.|...: :.....||.:.||  |::           ||:.:.:::.|:        
 Worm   123 AHFYDDDNGFRRPRS-NSSDLLILRKTSR--PISFNVVGVIDQKTDPYHQYMSVVDV-------- 176

  Fly   925 VKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFV--GMLTITDFI 987
                     |:|.|.::|:::.|......:||..:..:.:....:||:...:.|  .:||:||.:
 Worm   177 ---------YELCPNNSKVIIIDASTPTTRAFRIMRDHNITTLIVWDTSDARHVKRNILTLTDCL 232

  Fly   988 KILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAIKILIHSRIHRLPVIDP 1052
            ..::  .::|.|..:.|....:     :..||   |||:...:.:.|..:.|..:|:||:.|:|.
 Worm   233 NAIR--NETPPADGQVLRASDI-----LSGNQ---LVSVSISSKILDLCEELHQNRLHRVVVLDD 287

  Fly  1053 ATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGTYNNIETADETTSIITALKKFVER 1117
            |. .|:.|::.:|::..:......|....::.||:....|||:.|:....:..::..|::..:..
 Worm   288 AK-EVVNIISVRRVIAAIHKQNRSLHFAQWLSKSIGMSAIGTWENVAVISQNETVYRAMEDMLGF 351

  Fly  1118 RVSALPLVDSDGRLVDIYAKFDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQKCNL------- 1175
            ..||||:|||...::.:..|.|:..            :|.:.......|.:..:..::       
 Worm   352 HYSALPVVDSKQNVIGVITKTDICK------------ALPRNFIEPKRWLQETKVSDILHICKSQ 404

  Fly  1176 -----DESLYTIMERIVRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSGEGVGGSESSLRAS 1235
                 .:|:..:::.::..:......: .|.|.||:|||:|.|.:::..|           |..:
 Worm   405 ILISSADSVGQVLDTLLAGDTQSAFAI-HNGKAIGVISLTDFLSHILRSP-----------LATT 457

  Fly  1236 DPVLLRKVAEVEIPATAAAATTTTPPRSPSAGSGN 1270
            |          |.|:...|...|  |.|.|:.:.|
 Worm   458 D----------EEPSQEPAMPPT--PESNSSSTEN 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_001163671.1 CBS_pair_5 941..1069 CDD:239990 30/129 (23%)
CBS 952..1067 CDD:223591 28/116 (24%)
CBS 1023..1141 CDD:223591 31/117 (26%)
CBS_pair_28 1097..1215 CDD:240012 23/129 (18%)
CBS 1097..1213 CDD:223591 22/127 (17%)
aakg-5NP_871971.1 CBS 183..301 CDD:223591 30/128 (23%)
CBS_pair_5 184..300 CDD:239990 29/126 (23%)
CBS_pair_8 256..377 CDD:239993 33/136 (24%)
CBS 257..374 CDD:223591 31/120 (26%)
CBS_pair 330..448 CDD:239067 23/130 (18%)
CBS 331..446 CDD:223591 22/127 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S1437
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.860

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