DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNF4Agamma and prkag1

DIOPT Version :9

Sequence 1:NP_001163671.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:NP_001096506.1 Gene:prkag1 / 100125135 XenbaseID:XB-GENE-943598 Length:334 Species:Xenopus tropicalis


Alignment Length:311 Identity:199/311 - (63%)
Similarity:241/311 - (77%) Gaps:1/311 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   914 SDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFV 978
            ||:.|.||.::.:|.:.||||||||.|:|||||||.|.|||||:|||.|||||||||||:||.||
 Frog    20 SDVLESDSGVYTRFMKNHKCYDLIPISSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQGFV 84

  Fly   979 GMLTITDFIKILQMYYKSPNASMEQLEEHKLDTWRSV-LHNQVMPLVSIGPDASLYDAIKILIHS 1042
            |||||||||.||..|||||...:.:|||||::|||.: |.:...|||||.|.|||:||:..||.:
 Frog    85 GMLTITDFINILHRYYKSPMVQIYELEEHKIETWRELYLQDSFKPLVSISPSASLFDAVSSLIKN 149

  Fly  1043 RIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKSLRELKIGTYNNIETADETTSI 1107
            ||||||||.|.:||.||||||||||:||.|:::|:.|||::.|||::|.||||.||......|.:
 Frog   150 RIHRLPVISPDSGNTLYILTHKRILKFLKLFMSEVEKPAFVTKSLKDLHIGTYENIALVRPDTPV 214

  Fly  1108 ITALKKFVERRVSALPLVDSDGRLVDIYAKFDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQK 1172
            ..||..||:|||||||:||..||:||||:||||||||||||||:||:::.||..||:.:||||.|
 Frog   215 YVALGIFVQRRVSALPVVDDSGRVVDIYSKFDVINLAAEKTYNNLDITVTKALGHRSHYFEGVLK 279

  Fly  1173 CNLDESLYTIMERIVRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSGE 1223
            |...|:|.||:.|:|.||||||||||||....||:||||||..|||...||
 Frog   280 CYQHETLETIINRLVEAEVHRLVVVDENDVAKGIVSLSDILQCLVLTAGGE 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_001163671.1 CBS_pair_5 941..1069 CDD:239990 90/128 (70%)
CBS 952..1067 CDD:223591 80/115 (70%)
CBS 1023..1141 CDD:223591 73/117 (62%)
CBS_pair_28 1097..1215 CDD:240012 74/117 (63%)
CBS 1097..1213 CDD:223591 72/115 (63%)
prkag1NP_001096506.1 CBS_euAMPK_gamma-like_repeat1 38..175 CDD:341388 97/136 (71%)
CBS repeat 46..119 CDD:341388 54/72 (75%)
CBS repeat 131..175 CDD:341388 31/43 (72%)
CBS_euAMPK_gamma-like_repeat2 201..324 CDD:341399 76/122 (62%)
CBS repeat 202..267 CDD:341399 40/64 (63%)
CBS repeat 278..321 CDD:341399 27/42 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4230
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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