DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SNF4Agamma and irx4

DIOPT Version :9

Sequence 1:NP_001163671.1 Gene:SNF4Agamma / 42515 FlyBaseID:FBgn0264357 Length:1400 Species:Drosophila melanogaster
Sequence 2:NP_001263621.1 Gene:irx4 / 100038068 XenbaseID:XB-GENE-480570 Length:496 Species:Xenopus tropicalis


Alignment Length:567 Identity:103/567 - (18%)
Similarity:181/567 - (31%) Gaps:146/567 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   367 TPELRVEAQKLSKLNASSNAHTISFPSSFGGYSSVQGLFSQRYGSNRFPTA-------------- 417
            ||:..:....||....||..   |...|....|:...::...|.|....||              
 Frog    13 TPQFLMTTNSLSTCCESSGR---SLSDSAAAASAQTPVYCPVYESRLLATARHELNSAAALGVYG 74

  Fly   418 APHMSKQFFEPSLVEIRTPAQSNVALNT------TGLANSNHQSLTCDTNSLANKPRT----PSE 472
            :|:.|.|.: .:.|.....|.:..:||.      ||.|:             |..|:|    |.|
 Frog    75 SPYTSTQGY-GNYVTYGADASAFYSLNAFESKDGTGSAH-------------AGIPQTAAYYPYE 125

  Fly   473 RELDEIWIRRQDGGLSG-TAAPGAPGAPLPLLQQ--QQQQQRPVSLGGASTMPRLLRSESSASTT 534
            ..|.:....|. |.:.| |....|.......|:.  |:.::.|....|...|..::   :..:.|
 Frog   126 HTLSQYQYDRY-GTMDGSTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAII---TKMTLT 186

  Fly   535 SPSRQLTNSGSVSVSVSDDEQDGSLGGAGRMPGSRPSSAPAEPNAKAAKKAYKKMEKEQRRQEKE 599
            ..|....|:                  ..|:......:.|........|:.|.:.|:|:..::.:
 Frog   187 QVSTWFANA------------------RRRLKKENKMTWPPRNKCSDEKRPYDEEEEEEEEEDSQ 233

  Fly   600 QSRREKEARKLERETARRNER-EAAKLEKINRHSEKISRSTERMAMAGVGSRSGSLERRR----S 659
            ::..:.|.:.::.|.||.::. :.:.||..:                .:.|.|...|.::    .
 Frog   234 KATIKNEKKIVDEEVAREDKALDLSDLEDFD----------------AIESESSECELKQPFHHQ 282

  Fly   660 GEDSPVLNQSTVHGIASPNRRPTIFDV-FRPRAKSDAKRQKEKHLLDPSSADSSATSSTYSVSGG 723
            .:|...|.|   ....:.:.:..|..: ..|.|..:..|.|..|                  ..|
 Frog   283 PQDGHQLRQ---RDCVNDHCKDVILKMPITPAANQELDRTKICH------------------KPG 326

  Fly   724 TGPATSSAAGG--AGGAAAAAGQGAAGGAGGLMNSMKVAMQNFSHRQHPAVTITSADGTQSTAKS 786
            ..........|  .||.:.|..|...     :::| |..:.:.:|      |.||.:.|:..:..
 Frog   327 VDQCEQDVLRGRQRGGESKACFQQQQ-----ILDS-KPRIWSLAH------TATSLNQTEYPSCM 379

  Fly   787 KYKDGSAHPHQGSDAQYYHTVTAVRPNSSQRSPMTKVMD---------LFRHRSSSVVSEADKRK 842
            ....|.:.|...|.:....|...| .:..|.||:|.:.:         ||||   |.:::|....
 Frog   380 LKHQGLSSPSSSSSSSAVSTPVCV-IDRRQDSPVTSLRNWVDGVFHDPLFRH---STLNQALTNT 440

  Fly   843 ARAAAHQQQLAVQSAHMRRASADLEKRRASVGAAGRGLRGDGTLDPH 889
            ..:.|..:...:.|..:.|          |||.....::|.....||
 Frog   441 TVSWATTKGTLIDSGSLGR----------SVGNPTNAIKGQLPNIPH 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNF4AgammaNP_001163671.1 CBS_pair_5 941..1069 CDD:239990
CBS 952..1067 CDD:223591
CBS 1023..1141 CDD:223591
CBS_pair_28 1097..1215 CDD:240012
CBS 1097..1213 CDD:223591
irx4NP_001263621.1 Homeobox_KN 159..198 CDD:368670 7/59 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..236 5/32 (16%)
IRO 356..369 CDD:214716 4/19 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8683
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.