DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snmp1 and SCARB1

DIOPT Version :10

Sequence 1:NP_650953.1 Gene:Snmp1 / 42514 FlyBaseID:FBgn0260004 Length:551 Species:Drosophila melanogaster
Sequence 2:NP_001354910.1 Gene:SCARB1 / 949 HGNCID:1664 Length:552 Species:Homo sapiens


Alignment Length:482 Identity:130/482 - (26%)
Similarity:212/482 - (43%) Gaps:84/482 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 GAMFVFAIIYGWVIFPKILKFMISKQVTLKPGSDVRELWSNTPFPLHFYIYVFNVTNPDEVSEGA 77
            ||:.:       |:.|.::|..:.|.|.:.|.|....:|...|.|.:..:|.|:|.||.|:.:|.
Human    25 GAVMI-------VMVPSLIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEILKGE 82

  Fly    78 KPRLQEVGPFVFDEWKDKYDLEDDVVEDTVSFTMRNTFIFNPKESLPLTGEEE--IILPHPIMLP 140
            ||:::|.||:|:.|::.|.::..: ..|||||....||.|.|.:|   .|.|.  |::|:.::| 
Human    83 KPQVRERGPYVYREFRHKSNITFN-NNDTVSFLEYRTFQFQPSKS---HGSESDYIVMPNILVL- 142

  Fly   141 GGISVQREKAAMMELVSKGLSIVFPDAKAFLK--------------AKFMDLFFRGINVDCSSEE 191
             |.:|..|...|...:...|:......:||:.              ...::.:|.|:      ..
Human   143 -GAAVMMENKPMTLKLIMTLAFTTLGERAFMNRTVGEIMWGYKDPLVNLINKYFPGM------FP 200

  Fly   192 FSAKALCTVFYTGEIKQAKQVNQTHFLFSFMGQANHSDSGRFTVCRGVKNNKKLGKVVKFADEPE 256
            |..|                       |....:.|:||||.|||..||:|..::..|.|:....:
Human   201 FKDK-----------------------FGLFAELNNSDSGLFTVFTGVQNISRIHLVDKWNGLSK 242

  Fly   257 QDIWPDGECNTFVGTDSTVFAPGLKKEDGLWAFTPDLCRSLGAYYQHKSSYHGMPSMRYTLDL-- 319
            .|.|...:||...||...::.|.:..|..|..::|:.|||:...|:....:.|:|:.|:....  
Human   243 VDFWHSDQCNMINGTSGQMWPPFMTPESSLEFYSPEACRSMKLMYKESGVFEGIPTYRFVAPKTL 307

  Fly   320 ---GDIRADEKLHCFCEDPEDLDTCPPKGTMNLAAC-VGGPLMASMPHFYLGDPKLVADVDGLNP 380
               |.|....:..|         .|...|..|::.| ...||..|.|||...||.|...|.||:|
Human   308 FANGSIYPPNEGFC---------PCLESGIQNVSTCRFSAPLFLSHPHFLNADPVLAEAVTGLHP 363

  Fly   381 NEKDHAVYIDFELMSGTPFQAAKRLQFNLDMEPVEGIEPMKNLPKLILPMFW-----VEEGVQLN 440
            |::.|::::|...::|.|...:.:||.:|.|:.|.||.....:..::||:.|     ..||..|:
Human   364 NQEAHSLFLDIHPVTGIPMNCSVKLQLSLYMKSVAGIGQTGKIEPVVLPLLWFAESGAMEGETLH 428

  Fly   441 KTYTNLV------KYTLFLGLKINSVL 461
            ..||.||      .|..::.|.:..||
Human   429 TFYTQLVLMPKVMHYAQYVLLALGCVL 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snmp1NP_650953.1 CD36 11..480 CDD:460076 130/482 (27%)
SCARB1NP_001354910.1 CD36 16..446 CDD:460076 127/471 (27%)

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