DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snmp1 and scarb2c

DIOPT Version :10

Sequence 1:NP_650953.1 Gene:Snmp1 / 42514 FlyBaseID:FBgn0260004 Length:551 Species:Drosophila melanogaster
Sequence 2:NP_001352071.1 Gene:scarb2c / 337532 ZFINID:ZDB-GENE-030131-5789 Length:478 Species:Danio rerio


Alignment Length:487 Identity:115/487 - (23%)
Similarity:213/487 - (43%) Gaps:65/487 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SGAMFVFAIIYGWV-----IFPKILKFMISKQVTLKPGSDVRELWSNTPFPLHFYIYVFNVTNPD 71
            :||:.|..:|.|..     :..|::...:.:|:.|:.|::...:|.|.|.|::...|.||:|||.
Zfish    11 AGALCVLLLICGIALELTRVLQKLVNNTVKQQIVLENGTEAFSVWQNPPPPVYMQFYFFNLTNPA 75

  Fly    72 EVSEGAKPRLQEVGPFVFDEWKDKYDLEDDVVEDTVSFTMRNTFIFNPKESLPLTGEEEIILPHP 136
            ||..|.||.:.::||:.:.|::...:::.......|:.....|::|.|..|   .|.::.:: ..
Zfish    76 EVMSGDKPSVVQIGPYTYREYRPMEEVKFMDNGTRVAAINPKTYVFEPNMS---RGSQDDLV-RT 136

  Fly   137 IMLPGGISVQREKAAMM-ELVSKGLSIVFPDAKAFLKAKFMDLFFRGINVDCSSEEFSAKALCTV 200
            :.:|....:::.|.::: .|:|.           .:|||.:.:|                   ..
Zfish   137 VNIPAVTVMEKYKDSILARLISD-----------LMKAKGVGVF-------------------ET 171

  Fly   201 FYTGEIKQAKQ---VNQTHFL-----FSFMGQANHSDSGRFTVCRGVKNNKKLGKVVKFADEPEQ 257
            |..|::....:   :.:.|.|     |....:.|.::...:.:..|..:.:....:.::..:...
Zfish   172 FRVGDLLWGYEDPLLKELHMLVPDDHFGLFYKKNGTEYDSYVLLTGKPDYQDFASIDEWNGQRSL 236

  Fly   258 DIWPDGECNTFVGTDSTVFAPGLKKEDGLWAFTPDLCRSLGAYYQHKSSYHGMPSMRY-----TL 317
            :.|...|||...|||...|.|.:.|.|.|:.|:.||||||...|:...|..|:|..|:     ..
Zfish   237 NWWSSEECNMINGTDGASFHPIITKADRLYIFSSDLCRSLYVQYECDVSVQGVPGFRFVPPADVF 301

  Fly   318 DLGDIRADEKLHCFCEDPEDLDTCPPKGTMNLAAC-VGGPLMASMPHFYLGDPKLVADVDGLNPN 381
            ...||..|..  .||..|   ..|...|.:|.:.| .|.|::.|.||||..|.|.|.|:.|:.|.
Zfish   302 SSPDINPDNA--GFCVPP---GHCLGSGLLNASVCKQGAPIIMSSPHFYQADQKFVDDIWGMKPI 361

  Fly   382 EKDHAVYIDFELMSGTPFQAAKRLQFNLDMEPVEGIEPMKNLPKLILPMFWVEEGVQLNKTYTNL 446
            :::|..:.|...::|...|.|||:|.|:.::..........:..|:.|:.::.|...:::.....
Zfish   362 KEEHQTFADINPLTGIVLQGAKRVQVNVYLQQHSSFSQTGKIQTLVFPVMYINESAFIDEESAKK 426

  Fly   447 VKYTLFLGLKINSVLRWSLITFS---LVGLMF 475
            :...:   |..|.|:....|..|   |:|::|
Zfish   427 LHAVV---LNANVVINIPFIVISVGILLGIIF 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snmp1NP_650953.1 CD36 11..480 CDD:460076 115/487 (24%)
scarb2cNP_001352071.1 CD36 13..459 CDD:460076 114/485 (24%)

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