DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snmp1 and Scarb2

DIOPT Version :10

Sequence 1:NP_650953.1 Gene:Snmp1 / 42514 FlyBaseID:FBgn0260004 Length:551 Species:Drosophila melanogaster
Sequence 2:NP_031670.1 Gene:Scarb2 / 12492 MGIID:1196458 Length:478 Species:Mus musculus


Alignment Length:444 Identity:75/444 - (16%)
Similarity:119/444 - (26%) Gaps:161/444 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 GPSAGATFLPVSKTLIHHLLPHNLQADHHTATGAFHHRAEHYHQRAHRGSIGSSAYGTLAPSG-- 109
            ||....|.:....::|.|:  |.|:.......||....|.....|..:.....|.|...:|.|  
Mouse    31 GPIRQQTHVSPHLSVIQHM--HGLEGWSSQQGGAATEMAHSPMPRQVQWESDVSEYDNYSPGGSL 93

  Fly   110 CEDPPASALDEIF----------------SPLPVRHLDATGSA--------------STPLEIGT 144
            |.:.|.:...:..                |.||.||::|..|:              :|..:|..
Mouse    94 CSNEPYTEWADTLISHRQERNVQYNVQTESTLPNRHIEAMPSSYAQHWSNQKGERSFATSAQIPM 158

  Fly   145 DALWDAIGSPTTTTATA-----------------------------------------DTATTTT 168
            ...|.....|......|                                         |......
Mouse   159 SEQWPMPPPPVQPDFPAQPEVEEYDNWAPPPPWPSAEVLAPPERDEKDMVAIIDKMMNDLQLMKE 223

  Fly   169 STATAAVFIGQQPTIPATTN----------HASINNPQQHCHEQPDADCP-MADGSETTTTTTTE 222
            |.|:.....|.|.:.|..|.          :|..:.|:...|..|.|..| :.|.||   .....
Mouse   224 SAASRLTSKGHQASTPMRTEPLHFRKASQPNAIQSQPRISHHYSPVAGSPHVIDHSE---PAIPP 285

  Fly   223 QQAAGPEPGE----------------QEQQEPEPEPEIDIVINNVVCSFS--------------- 256
            :.:|.|...:                :|::...|.|:|...|:.....||               
Mouse   286 RHSARPHVVQRASSQYLPYQSSSVRFEEKEYRGPAPKIPFFIHRDPMEFSRLKLALMNLLPADSS 350

  Fly   257 -------VRCHLNLRDIALYGDN-----VEFRRENGMVTMKLRRPY-----TTASIWSS------ 298
                   :..||.|.:..|..|:     :.|......:..|..:|:     ..|::..|      
Mouse   351 ELFKYQVLVDHLRLEEACLIADSYINSPMPFSDTMAALNEKFGQPHHVALKKIAAVMDSPEIKRG 415

  Fly   299 ----------------GKITCTGATSEDQAKVAARRYSRCLQKLGFNVRLRNFR 336
                            |.:...|...|.:.:..: ..:|.|.||...:| .|||
Mouse   416 DTAAFERFALHVQSLVGMLKTLGPEGEAELRCGS-HVARLLTKLPTELR-ANFR 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snmp1NP_650953.1 CD36 11..480 CDD:460076 75/444 (17%)
Scarb2NP_031670.1 CD36 28..457 CDD:460076 69/431 (16%)
Important for interaction with GBA1 155..191 4/35 (11%)

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