DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snmp1 and Cd36

DIOPT Version :10

Sequence 1:NP_650953.1 Gene:Snmp1 / 42514 FlyBaseID:FBgn0260004 Length:551 Species:Drosophila melanogaster
Sequence 2:NP_031669.3 Gene:Cd36 / 12491 MGIID:107899 Length:472 Species:Mus musculus


Alignment Length:115 Identity:29/115 - (25%)
Similarity:38/115 - (33%) Gaps:34/115 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 SIWSSGKITC-------TGATSEDQAKVAARRY----------SRCLQKLGFNVRLRNF------ 335
            ::||    ||       ...||.|...|..|:|          ..|...||.......|      
Mouse   159 NMWS----TCAAMRSPVANLTSIDSICVDVRQYGIIPWNATPGKACGSTLGDICNTNEFYLSYHL 219

  Fly   336 RIVNVLG----TCAMPWGIKIVNFSEKYKKDASYEPELHPGVTYKLHSPR 381
            .||...|    ..|:...:.|::.:..|.||||:   ||.....||...|
Mouse   220 YIVACAGAGATVIALIHFLMILSANWAYLKDASH---LHSYQDIKLKEER 266

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snmp1NP_650953.1 CD36 11..480 CDD:460076 29/115 (25%)
Cd36NP_031669.3 CD36 14..463 CDD:460076 29/115 (25%)
Required for interaction with thrombospondins, THBS1 and THBS2. /evidence=ECO:0000269|PubMed:15748999 93..120
Interaction with PTK2, PXN and LYN. /evidence=ECO:0000250|UniProtKB:P16671 460..472
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.