DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5810 and alrm

DIOPT Version :9

Sequence 1:NP_650952.2 Gene:CG5810 / 42513 FlyBaseID:FBgn0038866 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_651393.1 Gene:alrm / 43074 FlyBaseID:FBgn0039332 Length:471 Species:Drosophila melanogaster


Alignment Length:387 Identity:102/387 - (26%)
Similarity:170/387 - (43%) Gaps:54/387 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 CRENTCTNLKYPSASAVAYFSENVTKHLRKYETLVLHSSDLANLPRKIFLNLPQLVEFHVLECEL 99
            |....|||:....:..|......:    .....|...:|.:|.:|..:|...|.|....:..|.|
  Fly    41 CSAGICTNVVIGRSDYVILSQAPI----GGTTMLTFLNSSIAKIPHLLFDTFPDLQVLRMENCSL 101

  Fly   100 QQIESVCFDGAKNLKRLNFGGNALRVLDSNTFELATQLEELNLSDNQLEDLPTTIFRPLKNLQKI 164
            :..|...|:||.||..|..|.|.|:.:..|.|..|..|..|:|..|||:.|....|..||.::::
  Fly   102 ETFEKPQFEGASNLMSLFLGYNRLKDIPKNIFLGADNLATLHLQGNQLKQLGNHSFHALKEVKEL 166

  Fly   165 NLSNNRLITLSQHIFSQLGSLKSINVDSNQLVELPGELFRDQRKHLSE-------FSAQSNQLVR 222
            :|:.|:|..:|..:||.:..|..:|:..|:|..||..:| |:..:|::       |:|..::|::
  Fly   167 SLAENQLEQISLGVFSGMRKLMDLNLAGNRLDALPRGVF-DRNLNLTKLNLARNRFTAFESELLK 230

  Fly   223 ---------IPFNIFREID------HLSLSFNPQLRRLHLSAKINELEATNCDLES---VELDGR 269
                     |..|||:|:.      .::::.:..||||.:...|:||:..|..|..   :.|...
  Fly   231 LQPVFTQLDISGNIFQELTLNFTMLDVAIAHSCDLRRLTVYGVIHELDLHNNSLREMPHIPLAAN 295

  Fly   270 VIGVQLEANP--KLHELKISQPQDLEHLYLANTNLYRL--DFLSKASKLVDLDVT--DIVNLADL 328
            |..:.|..||  .|....:.:...|..|.|:.|..:.|  ....|.|.|..||::  .|.:|   
  Fly   296 VSSLDLSHNPLGNLQGNPLRRFTSLLRLNLSATGAHELPEGLFKKQSHLQMLDISGNSIYSL--- 357

  Fly   329 PKITSAKGLERLSFTYDNLTSNHMDMLPHL-------KDLNYLEISHEKGKEIFIKDLDEDF 383
             |||....|:.|.:.|....:.:.|.|..|       ||::::|       :|...:|.:|:
  Fly   358 -KITIFDSLKALQYFYFQQNNWNCDFLQLLMSSFVKRKDISFME-------DITAPELVDDY 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5810NP_650952.2 leucine-rich repeat 65..88 CDD:275380 5/22 (23%)
LRR_8 87..147 CDD:290566 21/59 (36%)
leucine-rich repeat 89..112 CDD:275380 7/22 (32%)
leucine-rich repeat 113..136 CDD:275380 8/22 (36%)
LRR_8 135..195 CDD:290566 19/59 (32%)
LRR_4 135..175 CDD:289563 13/39 (33%)
leucine-rich repeat 137..160 CDD:275380 9/22 (41%)
leucine-rich repeat 161..184 CDD:275380 6/22 (27%)
leucine-rich repeat 185..209 CDD:275380 8/23 (35%)
leucine-rich repeat 210..231 CDD:275380 8/36 (22%)
alrmNP_651393.1 LRR_RI 84..354 CDD:238064 76/270 (28%)
LRR_8 91..149 CDD:290566 20/57 (35%)
leucine-rich repeat 91..114 CDD:275380 7/22 (32%)
leucine-rich repeat 115..138 CDD:275380 8/22 (36%)
LRR_8 138..197 CDD:290566 19/58 (33%)
leucine-rich repeat 139..162 CDD:275380 9/22 (41%)
leucine-rich repeat 163..186 CDD:275380 6/22 (27%)
LRR_8 185..243 CDD:290566 13/58 (22%)
leucine-rich repeat 187..210 CDD:275380 8/23 (35%)
leucine-rich repeat 211..283 CDD:275380 17/71 (24%)
leucine-rich repeat 284..319 CDD:275380 7/34 (21%)
LRR_8 318..377 CDD:290566 18/62 (29%)
leucine-rich repeat 320..343 CDD:275380 6/22 (27%)
leucine-rich repeat 344..365 CDD:275380 8/24 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007563
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
33.010

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