DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5810 and CG4950

DIOPT Version :10

Sequence 1:NP_650952.2 Gene:CG5810 / 42513 FlyBaseID:FBgn0038866 Length:428 Species:Drosophila melanogaster
Sequence 2:NP_648855.2 Gene:CG4950 / 39783 FlyBaseID:FBgn0036587 Length:574 Species:Drosophila melanogaster


Alignment Length:460 Identity:104/460 - (22%)
Similarity:202/460 - (43%) Gaps:62/460 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 RMLNYLNYILIAVIAFATCESQ------KLEEI-AIDSLDCRENTCTNLKYPSASAVAYFSENV- 58
            |....|..|:|.::|.::|:..      :.:|. ::..:|..|..||...:....:.....:|: 
  Fly     3 RTRRILEVIVILILAISSCDGSGGDIPLRCDEYDSMGYMDVNEAFCTVTGFTVTHSQNVVIKNIP 67

  Fly    59 ----TKHLRKYETLVLHSSDLANLPRKIFLNLPQLVEFHVLECELQQIESVCFDGAKNLKRLNFG 119
                .|.::.||:.:|:      :|..:|...|.|....|....:.::....|..|.||..||..
  Fly    68 PGNMVKFMKFYESTLLY------MPFHLFETFPYLKTLDVSNTNILELTRNAFSAASNLTYLNLA 126

  Fly   120 GNALRVLDSNTFELATQLEELNLSDNQLEDLPTTIFRPLKNLQKINLSNNRLITLSQHIFSQLGS 184
            .|.|..:.::.|..|..|..|:||.|::..|....|..|..:.:|.|:.|.|..|...||.....
  Fly   127 YNNLTSIQTSVFIGANVLMRLDLSYNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEY 191

  Fly   185 LKSINVDSNQLVELPGELFRDQRKHLSEFSAQSNQLVRIPFNIFRE---IDHLSLSFNPQLRRLH 246
            |:.::.:.|.|..:..|:||:.|: :.|.:..:|:|:.|..:.|.:   :::|.||:| :|:...
  Fly   192 LEKVSFEGNLLTSIQPEVFRNMRR-IKEVNLSNNRLIFIHPDTFADAASLENLVLSYN-ELKNFQ 254

  Fly   247 LSAK--INELEATNCDLESVELDG-RVIGVQLEANPKLHELKISQPQDLEHLYLANTNLYRLDFL 308
            |:.|  :::|...|..|.::.::. |.:..   ::.::.||.:.|...:|.|.|:...|..:..:
  Fly   255 LTEKNIVHQLHLDNNYLTNLTINATRFVRA---SHNQISELFLHQSLHIETLDLSANKLSSISNI 316

  Fly   309 SKASKLVDLDVTD----IVNLADLPKITSAKG---------------------LERLSFTYDNLT 348
            :..:.::.|||:|    .:|::...::...:|                     ||.|..:::|||
  Fly   317 TNITHMLYLDVSDNPIGPLNISTFSQLKRLRGLNLRGTGIRELKFGMFSKQKYLEELDLSFNNLT 381

  Fly   349 SNHMDM-LPHLKDLNYLEI-----SHEKGKEIFIKDLD--EDFFVEEAELNCGQLADLLEFVELP 405
            ..::|| :|:|.:|....|     :..:|...|.:...  :...|.....||..|..||....||
  Fly   382 ILNLDMFVPYLTNLKKFLIDGNGLTELQGNRTFSEAFPQLQKLGVSRNRFNCSYLHHLLIPPSLP 446

  Fly   406 KDTTI 410
            :...:
  Fly   447 ESVVL 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5810NP_650952.2 LRR <61..353 CDD:443914 75/322 (23%)
leucine-rich repeat 65..88 CDD:275380 5/22 (23%)
leucine-rich repeat 89..112 CDD:275380 4/22 (18%)
leucine-rich repeat 113..136 CDD:275380 7/22 (32%)
leucine-rich repeat 137..160 CDD:275380 8/22 (36%)
leucine-rich repeat 161..184 CDD:275380 7/22 (32%)
leucine-rich repeat 185..209 CDD:275380 7/23 (30%)
leucine-rich repeat 210..231 CDD:275380 5/23 (22%)
CG4950NP_648855.2 LRR 96..411 CDD:443914 75/319 (24%)
leucine-rich repeat 96..119 CDD:275380 4/22 (18%)
leucine-rich repeat 120..143 CDD:275380 7/22 (32%)
leucine-rich repeat 144..167 CDD:275380 8/22 (36%)
leucine-rich repeat 168..191 CDD:275380 7/22 (32%)
leucine-rich repeat 192..215 CDD:275380 6/22 (27%)
leucine-rich repeat 216..239 CDD:275380 5/22 (23%)
leucine-rich repeat 240..299 CDD:275380 14/62 (23%)
leucine-rich repeat 300..321 CDD:275380 4/20 (20%)
leucine-rich repeat 322..345 CDD:275380 5/22 (23%)
leucine-rich repeat 346..365 CDD:275380 1/18 (6%)
leucine-rich repeat 370..394 CDD:275380 10/23 (43%)
leucine-rich repeat 395..420 CDD:275380 4/24 (17%)

Return to query results.
Submit another query.