DRSC/TRiP Functional Genomics Resources

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Protein Alignment cDIP and chadla

DIOPT Version :9

Sequence 1:NP_650951.1 Gene:cDIP / 42512 FlyBaseID:FBgn0038865 Length:554 Species:Drosophila melanogaster
Sequence 2:XP_017210255.1 Gene:chadla / 565474 ZFINID:ZDB-GENE-121205-4 Length:791 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cDIPNP_650951.1 leucine-rich repeat 118..142 CDD:275380
LRR_RI 143..407 CDD:238064
leucine-rich repeat 143..166 CDD:275380
LRR_8 166..225 CDD:290566
leucine-rich repeat 167..190 CDD:275380
leucine-rich repeat 191..214 CDD:275380
leucine-rich repeat 215..238 CDD:275380
leucine-rich repeat 239..265 CDD:275380
leucine-rich repeat 266..325 CDD:275380
LRR_8 304..357 CDD:290566
leucine-rich repeat 326..347 CDD:275380
leucine-rich repeat 348..394 CDD:275380
LRR_8 369..428 CDD:290566
LRR_4 393..433 CDD:289563
leucine-rich repeat 395..418 CDD:275380
chadlaXP_017210255.1 LRRNT 22..49 CDD:279764
leucine-rich repeat 55..76 CDD:275380
LRR_8 75..135 CDD:290566
leucine-rich repeat 77..100 CDD:275380
leucine-rich repeat 101..124 CDD:275380
leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 149..172 CDD:275380
LRR_8 172..231 CDD:290566
leucine-rich repeat 173..196 CDD:275380
leucine-rich repeat 197..220 CDD:275380
leucine-rich repeat 221..243 CDD:275380
LRR_8 242..300 CDD:290566
leucine-rich repeat 244..267 CDD:275380
leucine-rich repeat 417..437 CDD:275380
LRR_8 436..496 CDD:290566
leucine-rich repeat 438..461 CDD:275380
LRR_RI <451..658 CDD:238064
leucine-rich repeat 462..485 CDD:275380
leucine-rich repeat 486..510 CDD:275380
leucine-rich repeat 511..535 CDD:275380
LRR_8 535..594 CDD:290566
leucine-rich repeat 536..559 CDD:275380
leucine-rich repeat 560..583 CDD:275380
leucine-rich repeat 584..608 CDD:275380
leucine-rich repeat 609..633 CDD:275380
leucine-rich repeat 634..656 CDD:275380
LRRCT 664..>699 CDD:214507
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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