DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cDIP and Tl

DIOPT Version :9

Sequence 1:NP_650951.1 Gene:cDIP / 42512 FlyBaseID:FBgn0038865 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_001262995.1 Gene:Tl / 43222 FlyBaseID:FBgn0262473 Length:1117 Species:Drosophila melanogaster


Alignment Length:540 Identity:120/540 - (22%)
Similarity:187/540 - (34%) Gaps:188/540 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CLPFLCSYLLISLAATATTDEDADADVDSGSSRIVLVSSLEGHCQTEGKVTSCRGFEFAGEDEKA 70
            |.|.:..|.:|           ..|:.::.:.|:.:  ..:.:.|....:|....::        
  Fly    45 CAPIMSEYEII-----------CPANAENPTFRLTI--QPKDYVQIMCNLTDTTDYQ-------- 88

  Fly    71 TFDLPTEVRIAE-----------DGTTYEVGDEEH-----SRTLIFE------NCT--------- 104
              .||.::||.|           .|.|......::     ..|||||      |.|         
  Fly    89 --QLPKKLRIGEVDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHG 151

  Fly   105 ----------FTNFPLRLFYTL-EVSELDMRGCGIRFIYWENFSIGADKLVILLLSDNHIEVLPT 158
                      .|:.|..|...: .:|.|::|.                          :||.:|:
  Fly   152 LKRFRFTTRRLTHIPANLLTDMRNLSHLELRA--------------------------NIEEMPS 190

  Fly   159 KTFRGAGNLEFIFLNRNKLGKLQAGAFDNLLKLQYL------------------------DLTEN 199
            ..|....|||.|....|||.::..|.|..:.||:.|                        |:.:|
  Fly   191 HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLWSNQLHNLTKHDFEGATSVLGIDIHDN 255

  Fly   200 RLEALAADVFAGLKSLRHVGLAGNQLTTIESDLFAHNPDLLSVAMQNNR--LREVGEYAFRSRGR 262
            .:|.|..||||.|.::..:.|:.|...::...||.||..|..|.:.|||  |..:....|     
  Fly   256 GIEQLPHDVFAHLTNVTDINLSANLFRSLPQGLFDHNKHLNEVRLMNNRVPLATLPSRLF----- 315

  Fly   263 HHQMQYVDLSNNPELVVLLLNINATNLTARNCSLDRVNLYGSVTNVDLSDNRVRELYFPASEALE 327
                     :|.|||.:|.|.....:|..     |.......:||:.|.||.::.|  ||: .||
  Fly   316 ---------ANQPELQILRLRAELQSLPG-----DLFEHSTQITNISLGDNLLKTL--PAT-LLE 363

  Fly   328 HLVLRNNSLVQLASLSRVPRLRHLDVADNPNLGQLPDGWRTPHLEMLVLRNTGQMELPLE--ALQ 390
            |.|                .|..||:::| .|..|||.        |....|...:|.||  .|.
  Fly   364 HQV----------------NLLSLDLSNN-RLTHLPDS--------LFAHTTNLTDLRLEDNLLT 403

  Fly   391 GMQ--------NLQKLDISGNNLTEIDPSAFPTLTQLTHFYIHGNNWNCFSLRN-IMDVLIRANG 446
            |:.        ||..|.:|.|.|..||..||.:...|.|.::..|:   ..|:. ::|::::.  
  Fly   404 GISGDIFSNLGNLVTLVMSRNRLRTIDSRAFVSTNGLRHLHLDHND---IDLQQPLLDIMLQT-- 463

  Fly   447 IAYTVDNYDPDFPGEYFHGI 466
                    ..:.|..|.||:
  Fly   464 --------QINSPFGYMHGL 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cDIPNP_650951.1 leucine-rich repeat 118..142 CDD:275380 3/23 (13%)
LRR_RI 143..407 CDD:238064 79/299 (26%)
leucine-rich repeat 143..166 CDD:275380 4/22 (18%)
LRR_8 166..225 CDD:290566 23/82 (28%)
leucine-rich repeat 167..190 CDD:275380 8/22 (36%)
leucine-rich repeat 191..214 CDD:275380 11/46 (24%)
leucine-rich repeat 215..238 CDD:275380 6/22 (27%)
leucine-rich repeat 239..265 CDD:275380 7/27 (26%)
leucine-rich repeat 266..325 CDD:275380 16/58 (28%)
LRR_8 304..357 CDD:290566 15/52 (29%)
leucine-rich repeat 326..347 CDD:275380 4/20 (20%)
leucine-rich repeat 348..394 CDD:275380 15/55 (27%)
LRR_8 369..428 CDD:290566 19/68 (28%)
LRR_4 393..433 CDD:289563 13/47 (28%)
leucine-rich repeat 395..418 CDD:275380 9/22 (41%)
TlNP_001262995.1 LRR_8 174..233 CDD:290566 19/84 (23%)
leucine-rich repeat 176..198 CDD:275380 7/47 (15%)
leucine-rich repeat 199..222 CDD:275380 8/22 (36%)
LRR_RI 216..542 CDD:238064 80/320 (25%)
LRR_8 221..281 CDD:290566 14/59 (24%)
leucine-rich repeat 223..270 CDD:275380 11/46 (24%)
leucine-rich repeat 271..294 CDD:275380 6/22 (27%)
leucine-rich repeat 295..320 CDD:275380 8/38 (21%)
leucine-rich repeat 321..343 CDD:275380 5/26 (19%)
LRR_8 342..402 CDD:290566 25/87 (29%)
leucine-rich repeat 344..367 CDD:275380 12/41 (29%)
leucine-rich repeat 368..391 CDD:275380 9/31 (29%)
LRR_8 390..450 CDD:290566 19/62 (31%)
leucine-rich repeat 392..415 CDD:275380 5/22 (23%)
leucine-rich repeat 416..439 CDD:275380 9/22 (41%)
leucine-rich repeat 440..474 CDD:275380 7/46 (15%)
leucine-rich repeat 475..498 CDD:275380 0/1 (0%)
LRR_8 477..534 CDD:290566
leucine-rich repeat 499..520 CDD:275380
leucine-rich repeat 523..552 CDD:275380
LRRCT 561..619 CDD:214507
LRRNT 631..667 CDD:214470
leucine-rich repeat 664..693 CDD:275380
LRR_8 669..726 CDD:290566
leucine-rich repeat 694..715 CDD:275380
leucine-rich repeat 716..737 CDD:275380
LRRCT 751..800 CDD:214507
TIR 858..996 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453822
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.