DRSC/TRiP Functional Genomics Resources

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Protein Alignment cDIP and CG18249

DIOPT Version :9

Sequence 1:NP_650951.1 Gene:cDIP / 42512 FlyBaseID:FBgn0038865 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_001163549.1 Gene:CG18249 / 40964 FlyBaseID:FBgn0037553 Length:559 Species:Drosophila melanogaster


Alignment Length:375 Identity:96/375 - (25%)
Similarity:158/375 - (42%) Gaps:43/375 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 CTFTNFPLRLFYT--LEVSELDMRGCGIRFIYWENFSI--GADKLVILLLSDNHIE--------- 154
            |:.::.|:....|  |::.||.:|.|..:.|.|....:  |...|||...:..||.         
  Fly    40 CSLSDRPVAYSATPALQLRELHLRNCSRQSITWLVLQLTPGLRTLVIRNCATYHISKESLRPVEN 104

  Fly   155 ------------VLPTKTFRGAGNLEFIFLNRNKLGKLQAGAFDNLLKLQYLDLTENRLEALAAD 207
                        ||..:.|.....||.:.|::|.:..:...||..|.||:.|.|..|.:..:.:.
  Fly   105 LTSLQMQGTSLGVLRDQIFNAVPRLEILQLSQNFIHTVHVAAFQGLSKLRLLGLQGNAIAEILSS 169

  Fly   208 VFAGLKSLRHVGLAGNQLTTIESDLFAHNPDLLSVAMQNNRLREVGEYAFRSRGRHHQMQYVDLS 272
            ....|..|.|:.|:.|:|||:..::||.|..|.::.:..|.||.:.....   |....::.:||.
  Fly   170 TLDPLMELVHLDLSRNELTTLPQNIFAKNKKLQTLLLNGNPLRILMPDVL---GSLPNLRLLDLG 231

  Fly   273 NNPELVVLLLNI-NATNLTARNCSLDRVNLYGSVTNVDLSDNRVRELYFPASEALEHLVLRNNSL 336
            :..||.|:.||: |..||.....||..:.:.|....:...:|.:..|......::..:.|..|.|
  Fly   232 HAAELEVMTLNLTNVQNLVLEGSSLSSLVINGGFIKLQAGNNELNHLQVGNKSSVIEMDLHGNLL 296

  Fly   337 --VQLASLSR-VPRLRHLDVADN-----PNLGQLPDGWRT------PHLEMLVLRNTGQMELPLE 387
              ...|:|.| :..|:.||::.|     |..|...|...|      |.|:.|.|.|...:.||.|
  Fly   297 NGNDTAALLRGMWNLQRLDLSKNRIEALPQHGSGLDASGTQELLILPSLKFLNLANNQLVRLPPE 361

  Fly   388 ALQGMQNLQKLDISGNNLTEIDPSAFPTLTQLTHFYIHGNNWNCFSLRNI 437
            :......|..||:|.|.:..:|.:...:|:.|...|:.||..|..:.:.:
  Fly   362 SPILSSRLSYLDLSHNLMLTLDVAILRSLSVLKGLYVEGNRLNTINYQKL 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cDIPNP_650951.1 leucine-rich repeat 118..142 CDD:275380 7/25 (28%)
LRR_RI 143..407 CDD:238064 78/299 (26%)
leucine-rich repeat 143..166 CDD:275380 8/43 (19%)
LRR_8 166..225 CDD:290566 17/58 (29%)
leucine-rich repeat 167..190 CDD:275380 7/22 (32%)
leucine-rich repeat 191..214 CDD:275380 5/22 (23%)
leucine-rich repeat 215..238 CDD:275380 10/22 (45%)
leucine-rich repeat 239..265 CDD:275380 5/25 (20%)
leucine-rich repeat 266..325 CDD:275380 15/59 (25%)
LRR_8 304..357 CDD:290566 12/60 (20%)
leucine-rich repeat 326..347 CDD:275380 6/23 (26%)
leucine-rich repeat 348..394 CDD:275380 16/56 (29%)
LRR_8 369..428 CDD:290566 18/58 (31%)
LRR_4 393..433 CDD:289563 12/39 (31%)
leucine-rich repeat 395..418 CDD:275380 7/22 (32%)
CG18249NP_001163549.1 leucine-rich repeat 57..80 CDD:275380 6/22 (27%)
LRR_8 104..163 CDD:290566 15/58 (26%)
leucine-rich repeat 105..128 CDD:275380 3/22 (14%)
LRR_RI 107..438 CDD:238064 80/308 (26%)
leucine-rich repeat 129..152 CDD:275380 7/22 (32%)
leucine-rich repeat 153..176 CDD:275380 5/22 (23%)
LRR_8 176..232 CDD:290566 17/58 (29%)
leucine-rich repeat 177..200 CDD:275380 10/22 (45%)
leucine-rich repeat 201..224 CDD:275380 5/25 (20%)
leucine-rich repeat 225..258 CDD:275380 12/32 (38%)
leucine-rich repeat 259..310 CDD:275380 9/50 (18%)
leucine-rich repeat 311..344 CDD:275380 8/32 (25%)
LRR_8 343..403 CDD:290566 19/59 (32%)
leucine-rich repeat 345..368 CDD:275380 7/22 (32%)
leucine-rich repeat 369..390 CDD:275380 6/20 (30%)
leucine-rich repeat 393..417 CDD:275380 5/19 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443095
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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