DRSC/TRiP Functional Genomics Resources

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Protein Alignment cDIP and sym-1

DIOPT Version :9

Sequence 1:NP_650951.1 Gene:cDIP / 42512 FlyBaseID:FBgn0038865 Length:554 Species:Drosophila melanogaster
Sequence 2:NP_510426.1 Gene:sym-1 / 181555 WormBaseID:WBGene00006366 Length:680 Species:Caenorhabditis elegans


Alignment Length:393 Identity:98/393 - (24%)
Similarity:173/393 - (44%) Gaps:47/393 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 EGKVTSCRGFEFAGEDEKATFDLPTEVRIAEDGTTYEVGDEEHSRTLIFENCTFTNFPLRLFYTL 116
            ||.|..|.|.:.....||    |.|.       ||.||      |.|..||........:.|.||
 Worm    36 EGPVIKCSGHDGLRMVEK----LSTT-------TTMEV------RELALENADIIEVGPKAFKTL 83

  Fly   117 EVSELDMRGCGIRFIYWENFSIGADKLVILLLSDNHIEVLPTKTFRGAGNLEFIFLNRNKLGKLQ 181
            .:.:|.:....|..|:...|:...:.:..|.||:|:::.:||....|...|..:.|..||:..:.
 Worm    84 RIKKLILSNNRIEKIHDHAFTGLENVMQELSLSENNLKEVPTSALAGLRVLNILSLKCNKIENIT 148

  Fly   182 AGAFDNLLKLQYLDLTENRLEALAADVFAGLK-SLRHVGLAGNQLTTIESDLFAHNPDLLSVAMQ 245
            ..||.|:..|..::|..|::.::|||.||.:| ||:::.|..|.:|...|....:..:|:::.::
 Worm   149 TKAFVNMTSLIDVNLGCNQICSMAADTFANVKMSLQNLILDNNCMTEFPSKAVRNMNNLIALHIK 213

  Fly   246 NNRLREVGEYAFRSRGRHHQMQYVDLSNNPELVVLLLNINATNLT-ARNCSLDRV----NLYGSV 305
            .|::..:           .|..:|:|::     :.:|::|..|:: .:..:|...    .||.:.
 Worm   214 YNKINAI-----------RQNDFVNLTS-----LSMLSLNGNNISEIKGGALQNTPNLHYLYLNE 262

  Fly   306 TNVDLSDNRVRELYFPASEALEHLVLRNNSLVQLAS--LSRVPRLRHLDVADNPNLGQLPDGWRT 368
            .|:...||.|.|.:    :.|:.|.|..|:...:..  ...:..::||::..|......|..:..
 Worm   263 NNLQTLDNGVLEQF----KQLQVLDLSFNNFTDITKEMFEGLESIQHLNLDSNRISAVAPGAFAG 323

  Fly   369 PHLEMLVLRNTGQMELPLEALQGMQNLQKLDISGNNLTEIDPSAFPTLTQLTHFYIHGNNWNCFS 433
            ..|.:|.|.|....|:..:.|:|...|:.:.:|.||:.|:...:|..|..| |.....|| ...|
 Worm   324 TPLLLLWLPNNCLTEVSQQTLKGAPFLRMVSLSNNNIREVHELSFDHLPNL-HTLDLANN-KIMS 386

  Fly   434 LRN 436
            |:|
 Worm   387 LQN 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cDIPNP_650951.1 leucine-rich repeat 118..142 CDD:275380 4/23 (17%)
LRR_RI 143..407 CDD:238064 64/271 (24%)
leucine-rich repeat 143..166 CDD:275380 7/22 (32%)
LRR_8 166..225 CDD:290566 20/59 (34%)
leucine-rich repeat 167..190 CDD:275380 7/22 (32%)
leucine-rich repeat 191..214 CDD:275380 9/23 (39%)
leucine-rich repeat 215..238 CDD:275380 5/22 (23%)
leucine-rich repeat 239..265 CDD:275380 2/25 (8%)
leucine-rich repeat 266..325 CDD:275380 13/63 (21%)
LRR_8 304..357 CDD:290566 11/54 (20%)
leucine-rich repeat 326..347 CDD:275380 4/22 (18%)
leucine-rich repeat 348..394 CDD:275380 11/45 (24%)
LRR_8 369..428 CDD:290566 16/58 (28%)
LRR_4 393..433 CDD:289563 11/39 (28%)
leucine-rich repeat 395..418 CDD:275380 7/22 (32%)
sym-1NP_510426.1 leucine-rich repeat 62..81 CDD:275380 5/24 (21%)
LRR_5 74..208 CDD:290045 36/133 (27%)
LRR_RI 81..384 CDD:238064 77/324 (24%)
leucine-rich repeat 86..108 CDD:275380 4/21 (19%)
leucine-rich repeat 110..133 CDD:275380 7/22 (32%)
leucine-rich repeat 134..157 CDD:275380 7/22 (32%)
leucine-rich repeat 158..182 CDD:275380 9/23 (39%)
LRR_8 182..241 CDD:290566 13/74 (18%)
leucine-rich repeat 183..206 CDD:275380 5/22 (23%)
leucine-rich repeat 207..230 CDD:275380 5/33 (15%)
leucine-rich repeat 231..254 CDD:275380 4/22 (18%)
LRR_8 253..313 CDD:290566 14/63 (22%)
leucine-rich repeat 255..278 CDD:275380 7/26 (27%)
leucine-rich repeat 279..302 CDD:275380 4/22 (18%)
LRR_8 302..384 CDD:290566 22/83 (27%)
leucine-rich repeat 303..323 CDD:275380 4/19 (21%)
leucine-rich repeat 350..373 CDD:275380 7/22 (32%)
leucine-rich repeat 374..394 CDD:275380 7/18 (39%)
leucine-rich repeat 399..410 CDD:275378
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45617
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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