DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp8 and UBP11

DIOPT Version :9

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_013024.1 Gene:UBP11 / 853973 SGDID:S000001806 Length:717 Species:Saccharomyces cerevisiae


Alignment Length:669 Identity:148/669 - (22%)
Similarity:260/669 - (38%) Gaps:201/669 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 IAEIMRDQAEFLQRAEQNDEQLEKASKMWKRQAAEGDGLNATEDQE-----------LHFRILQL 403
            :.:::||::..:.                .|..||.:|:..|..::           :|...|.:
Yeast   105 VLKVVRDESTVIV----------------DRYLAESNGICRTIKRKRAYSLPLRPLPVHMASLSI 153

  Fly   404 ESKAQDYIVENNRLREELSRIQELHNVTQQLSQKEVEATRNIESKIRERQRLDEQHELE------ 462
            .:|...                .||.:..:|::...:.::  |..:||..::...::||      
Yeast   154 HNKFDG----------------SLHEIPNELTKPTNDNSK--EDIVRESNQIASSNKLEAGSEVA 200

  Fly   463 ----RQERERLLAIARETKKHYKSPTPSGPPS--PGRNLEDVHVVSDSLESLLQLTGDPDPTIAP 521
                ::...:...:...|.|.....|.|.|.:  |..:||....:.||.:         |.:.:.
Yeast   201 YYTSKEALSKPSYLKLSTGKDALFKTLSSPATAPPVHSLEVSSQIRDSSQ---------DSSSSL 256

  Fly   522 NKAEIPTFD-------RAMKPQPRN---VERTSQRVRDFSPVIGQNVGRGLTGLKNLGNTCYMNS 576
            :|.|.|..:       .:..|:..|   :|.::..:.:.|          :|||:|..||||:||
Yeast   257 SKVEKPKEEEGKIEAIESSAPKAYNLPVIEDSNDLLSELS----------ITGLQNPCNTCYINS 311

  Fly   577 ILQCLSNTPQLTEYCISDKYKNYISRSNK--TNGQVIEEVAALIKELW-NGQYKCVASRDLRYVV 638
            |:|||..|....:..::.||:.::: :||  ...|:...:..|.|::: ||....:.:|.|:...
Yeast   312 IIQCLFGTTLFRDLFLTKKYRLFLN-TNKYPKEVQLSRSIYVLFKKMYLNGGRAIIPNRFLKMCK 375

  Fly   639 GQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHVPR-QREMISASEKA----------WLEFTK 692
            .....:....||||:.|||.|::..:|.:|...:|.: ..:::|....|          |.|...
Yeast   376 KLRPDLNIPDDQQDTQEFLLIVLARIHEELSNENVVKYYPDLVSYDANALQVNPSKYEKWYERNV 440

  Fly   693 AKE--SMILHLFYGQMKSTVKCVACHKESATYESFSNLSLELP--------PNSNVCQLNQCMDM 747
            ..:  |.|.|::.||:::.:||..|...|.:|.:|..|||.:|        ..|...:|..|:::
Yeast   441 ITDGLSPIDHIYRGQLENILKCQRCGNSSYSYSTFYVLSLAIPKLSLYSFTSKSRKIKLEDCINL 505

  Fly   748 YFSGERIHG---WNCPSC-----KTKRD------------------------------------- 767
            :...|.:.|   |:||:|     |:|::                                     
Yeast   506 FTGDEELSGDNAWDCPNCRITDSKSKKEEITSQKKKSTIFGFHSRSRSKSPHHHHHHHHSSDDST 570

  Fly   768 ------------AIKKLDISKLPPVLVVHLKRFYADPSNSGSYMKKQNYLRFPL-ENLDM-NPYI 818
                        .||.||...|||:||:||.|||.|.:.     |....:.:|| .|:.: |..:
Yeast   571 KNAKKRNSKKLTTIKSLDFIVLPPILVIHLSRFYYDLTK-----KNSTVITYPLILNIILKNGKV 630

  Fly   819 ARAESRAVTPKTYQLYAVSNHYGTMEGGHYTAFC---KSANYG----KWFKFDDQVVS--ALDSS 874
            .|          |:||...||.|.:..||||:..   ||...|    .|..|||..:.  ..|.:
Yeast   631 IR----------YKLYGTVNHSGNLINGHYTSVVNKEKSHEIGLNRQVWVTFDDDYIQQHRKDRN 685

  Fly   875 N-------VVSSAAYILFY 886
            |       :.|...|:|||
Yeast   686 NFEAGKTEMSSDEVYVLFY 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..113 CDD:286108
RHOD 148..278 CDD:294087
UCH 562..886 CDD:278850 110/422 (26%)
Peptidase_C19R 564..887 CDD:239139 111/422 (26%)
UBP11NP_013024.1 UCH 298..704 CDD:395355 110/421 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1868
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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