DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp8 and UBP27

DIOPT Version :10

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_001190965.1 Gene:UBP27 / 830092 AraportID:AT4G39370 Length:505 Species:Arabidopsis thaliana


Alignment Length:441 Identity:92/441 - (20%)
Similarity:158/441 - (35%) Gaps:131/441 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   564 GLKNLGNTCYMNSILQCLSNTPQLTEYC--ISDKYKNYISRSNKTNGQVIEEVAALIKELWN-GQ 625
            ||:||||.|::|.|||.|::......:.  :.:..:..::...:....:...::||::||.. |.
plant    75 GLQNLGNNCFLNVILQALASCKDFRSFLQWVLEDARGSLAGEQEEQLPLTFALSALLQELGTVGS 139

  Fly   626 YKCVAS-RDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHVP------------RQR 677
            .:.|:: |.:...:..|.|.|....|||:.|.|..|:..|..::...:.|            |..
plant   140 RRSVSNPRKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEIVVCYRPSQSSNLSDILFSRNL 204

  Fly   678 EMISASE--------KAWLEFTKAKESMILHL---FYGQMKSTVKCVACHKE-SATYESFSNLSL 730
            .|::.||        |.|.:          ||   |.|.:.||:.|..|..: |..::.|.  :|
plant   205 RMLAPSEGLHGLMELKRWHK----------HLRGPFDGILGSTLMCRTCSSQISLEFQFFH--TL 257

  Fly   731 ELPP-----NSNV---CQLNQCMDMYFSGERIHGWNC---------------------------- 759
            .|.|     ..|:   |.|..|:..:.:.|::..:.|                            
plant   258 PLSPLLHHGGYNIMSGCTLEHCLKKFLNTEKVENYFCYRCWHGAALKYLSVIGAAETEIEKLRSC 322

  Fly   760 -----PSCKTK------------RDAIKKLDISKLPPVLVVHLK--------RFYADPSNSGSYM 799
                 ..|||.            ...:|:|.|::.|.|....||        :......|.....
plant   323 GGEDQCDCKTSLHLQRMPWSNSYSHILKQLIIARFPKVFAYSLKLDVKLLCIQVQRASFNMFEEF 387

  Fly   800 KKQNYLRFPL-----------------ENLDMNPYIARAESRAVTPKTYQLYAVSNHYGTMEGGH 847
            |...::.|||                 |.::|:....:.|: :.....|:|..|..|:|....||
plant   388 KLSGHIAFPLVLNLSLFTPSSIGVNIEERIEMSSEYQKPEA-SKNHGMYRLVTVVEHFGRTGSGH 451

  Fly   848 YTAFCKSANYGK------------WFKFDDQVVSALDSSNVVSSAAYILFY 886
            ||.:.....:.:            ||...|..|..:..|:|:.:.|.:|||
plant   452 YTVYRSVRVFSQEEEEEDCDEDLSWFSISDSEVCRVSESDVLGAEASLLFY 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..114 CDD:462647
RHOD 148..278 CDD:444705
Smc <361..>511 CDD:440809
Peptidase_C19R 564..887 CDD:239139 92/441 (21%)
UBP27NP_001190965.1 Peptidase_C19F 75..503 CDD:239127 92/441 (21%)
UBP12 <75..>259 CDD:227847 47/195 (24%)
Blue background indicates that the domain is not in the aligned region.

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