DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp8 and usp11

DIOPT Version :9

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:XP_002663119.3 Gene:usp11 / 568334 ZFINID:ZDB-GENE-081104-421 Length:990 Species:Danio rerio


Alignment Length:983 Identity:180/983 - (18%)
Similarity:283/983 - (28%) Gaps:527/983 - (53%)


- Green bases have known domain annotations that are detailed below.


  Fly   367 NDEQLEKASK----------MWKRQAAEGDGLNAT------EDQELH-----FRILQLESKAQDY 410
            |.:||.....          .||.....|| .|:|      ::.||:     :|:.:..::..|:
Zfish    27 NQQQLRAGDSWYLLDKRWYDQWKEYVDTGD-QNSTSYPGKIDNTELYEDLDSYRLKERLTENDDF 90

  Fly   411 I-VENNRLREELSRIQELHN-------VTQQLSQKEVEA---------TRNIESKIRER-QRLDE 457
            | |.....|:.||....:.|       |....|..:||.         :.|:||.:..: .|.|:
Zfish    91 ILVPAEAWRKLLSWYDMMDNQPPLERKVVDLPSTVKVEVYPVEIYLCLSSNLESTVTAQFSRADK 155

  Fly   458 QHELERQERERLLAIARETKKHYKSPTPSGPPSPGRNLEDVHVVSDSLESLLQLTGDPDPTIAPN 522
            .|           ||.::.::|:.                   ||::.||.|.:           
Zfish   156 IH-----------AIHQKIRQHFD-------------------VSETAESRLWM----------- 179

  Fly   523 KAEIPTFDRAMKPQPRNVERTSQRVRDFS-----------------------------PVIGQNV 558
                           |:|:.:|:|:|:.:                             |.|.:|.
Zfish   180 ---------------RSVDTSSERLRNLNMTVLDSCLSSGMTVIMEIRNADGTWPTSRPQIMRNS 229

  Fly   559 G--------RGLTGLKNLGNTCYMNSILQCLSNTPQLTEYCISDKYKNYISRSNK--TNGQVIEE 613
            .        .|:.||.||||||:|||.||||||||.||||.:.:.|...::.||.  ..|::.|.
Zfish   230 ADEDSYRGPPGVCGLTNLGNTCFMNSALQCLSNTPPLTEYFLKNLYLEELNFSNPLGMKGEIAEA 294

  Fly   614 VAALIKELWNGQYKCVASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHVPRQRE 678
            .|.:||::|:|::..|..|..:..||.:...|.|..|.||.|.|:.|:|.||.||..:   :::|
Zfish   295 YADVIKQMWSGRHYSVVPRVFKTKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRV---KKKE 356

  Fly   679 MI-----------SASEKAWLEFTKAKESMILHLFYGQMKSTVKCVACHKESATYESFSNLSLEL 732
            .|           ..:|:||....:..:|:|:..|:|..|||:.|..|:|.|.|::.|..||:.|
Zfish   357 YIELRDADGRPDQEVAEEAWRNHLRRNDSVIVDTFHGLFKSTLVCPECNKVSVTFDPFCYLSVPL 421

  Fly   733 -----------------------------------------------PPN--------------- 735
                                                           |||               
Zfish   422 PVSKERVMEVFYVSLDPTAKPTQYRLIVPKAGRVLDLCTALSQATGVPPNQMTVTDVFNHRFYRI 486

  Fly   736 ---------------------SNVC---------------------------------------- 739
                                 |:.|                                        
Zfish   487 YQSDESLSCILDRDDIFVYQLSSGCVDEDSDEVVLSIYMRERSHYRDYGSGSNSYGTSLFGHPLR 551

  Fly   740 ----------------------------------------------------------------- 739
                                                                             
Zfish   552 MSVPRAHCTPEHLYQLLLERLARYVRPLDPSEEVEEEEEDDEEELYKAQTNGVSDDEGEEDSEEA 616

  Fly   740 ----------------------------------------------------------------- 739
                                                                             
Zfish   617 GSSKKEEEPRASNEVNEQNNGQSEASPSSEGEERAEEEESSSEQERGSSTEEGQSACGSTDTTDG 681

  Fly   740 ----------------------------------------------------------------- 739
                                                                             
Zfish   682 DQSAGAEPSGKEEDEDEEEEDGEEAASCTPANKRHPGRRRYTERRKKALFTIQAVNSNGTTERGM 746

  Fly   740 ---------------------------------------------------QLNQCMDMYFSGER 753
                                                               ||.:|::::.:.|.
Zfish   747 AEAGGSISFSSQPYIAIDWDPDMKKKYYNENEAEKYIKHQSMDVPHQQTTVQLQECIELFTTVET 811

  Fly   754 I---HGWNCPSCKTKRDAIKKLDISKLPPVLVVHLKRF-YADPSNSGSYMKKQNYLRFPLENLDM 814
            :   :.|.||:||..:.|.||||:..||.||::||||| |...|..    |....:.|||.:||.
Zfish   812 LEEENPWYCPTCKRHQLATKKLDLWSLPEVLIIHLKRFSYTKYSRE----KLDTIVEFPLRDLDF 872

  Fly   815 NPYIARAESRAVTPK-TYQLYAVSNHYGTMEGGHYTAFCKSANYGKWFKFDDQVVSALDSSNVVS 878
            :.::.:....:..|. .|.|.:||||||.:..||||::.::.:.|:|:.|||..|:......:|:
Zfish   873 SGFLLKKTVNSTEPPCPYDLISVSNHYGGLRDGHYTSYARNKDNGQWYYFDDSKVTYAREEQIVT 937

  Fly   879 SAAYILFY 886
            ||||:|||
Zfish   938 SAAYLLFY 945

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..113 CDD:286108
RHOD 148..278 CDD:294087
UCH 562..886 CDD:278850 132/710 (19%)
Peptidase_C19R 564..887 CDD:239139 134/710 (19%)
usp11XP_002663119.3 UBP12 15..947 CDD:227847 180/983 (18%)
DUSP 34..119 CDD:283896 16/85 (19%)
Ubiquitin_3 133..219 CDD:291502 19/141 (13%)
Peptidase_C19 242..>419 CDD:271592 69/179 (39%)
USP7_C2 413..>504 CDD:291217 7/90 (8%)
Peptidase_C19R <793..946 CDD:239139 58/157 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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