DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp8 and Usp27x

DIOPT Version :10

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_062334.2 Gene:Usp27x / 54651 MGIID:1859645 Length:438 Species:Mus musculus


Alignment Length:397 Identity:118/397 - (29%)
Similarity:192/397 - (48%) Gaps:63/397 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   527 PTFDRAMKPQPRNVERTSQRVRDFSPVIGQNVGRGLTGLKNLGNTCYMNSILQCLSNTPQLTEYC 591
            ||:: ..||:...:....:|.|     |..:...||.||.||||||:||.|:|.|::||.|.::.
Mouse    48 PTWE-TTKPELELLGHNPRRRR-----IASSFTIGLRGLINLGNTCFMNCIVQALTHTPILRDFF 106

  Fly   592 ISDKYKNYISRSNKTNGQVIEEVAALIKELWNGQYKCVASRDLRYVVGQYQKIFRGVDQQDSHEF 656
            :||:::..:......   ::.|:::|.:||::|.........|.::|..:.:...|..|||:|||
Mouse   107 LSDRHRCEMPSPELC---LVCEMSSLFRELYSGNPSPHVPYKLLHLVWIHARHLAGYRQQDAHEF 168

  Fly   657 LTILMDWLHSDLQTLHVPRQREMISASEKAWLEFTKAKESMILHLFYGQMKSTVKCVACHKESAT 721
            |...:|.||...:...|.:    ::::....       ..:|..:|.|.::|.|.|.|||..|.|
Mouse   169 LIAALDVLHRHCKGDDVGK----VASNPNHC-------NCIIDQIFTGGLQSDVTCQACHGVSTT 222

  Fly   722 YESFSNLSLELP-------PNS--------------NVCQLNQCMDMYFSGERIHG---WNCPSC 762
            .:...::||:||       |.|              .:..|..|:..:...|.:..   ..|.||
Mouse   223 IDPCWDISLDLPGSCTSFWPMSPGRESSLNGESHIPGITTLTDCLRRFTRPEHLGSSAKIKCGSC 287

  Fly   763 KTKRDAIKKLDISKLPPVLVVHLKRFYADPSNSGSYMKK-QNYLRFPLENLDMNPYIARAESRAV 826
            ::.:::.|:|.:.|||.|...|.|||    .:|....:| ..|:.|||| |||.|::|.::...|
Mouse   288 QSYQESTKQLTMKKLPVVACFHFKRF----EHSAKQRRKITTYISFPLE-LDMTPFMASSKETRV 347

  Fly   827 ------------TPKTYQLYAVSNHYGTMEGGHYTAFCKSANYGKWFKFDDQVVSALDSSNVVSS 879
                        ....|.|:||.||.||:|.||||:|.:. :..:|||.||.|::.....:|:.|
Mouse   348 NGQLQLPTNSANNENKYSLFAVVNHQGTLESGHYTSFIRH-HRDQWFKCDDAVITKASIKDVLDS 411

  Fly   880 AAYILFY 886
            ..|:|||
Mouse   412 EGYLLFY 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..114 CDD:462647
RHOD 148..278 CDD:444705
Smc <361..>511 CDD:440809
Peptidase_C19R 564..887 CDD:239139 109/360 (30%)
Usp27xNP_062334.2 Peptidase_C19D 78..419 CDD:239125 109/361 (30%)
Blue background indicates that the domain is not in the aligned region.

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