DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp8 and Usp47

DIOPT Version :9

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster


Alignment Length:814 Identity:175/814 - (21%)
Similarity:292/814 - (35%) Gaps:253/814 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 TYRAPIQIV--EGGYEYFIMMYPTHCTNPSVQAPQQNNNDIETIDDIEYPSIHDITMKE------ 311
            |.:..|.::  :..||.|.::...|           :|.|:..::.:|...::::...|      
  Fly    34 TVKRVIDLIGTQFSYEKFELLLQPH-----------DNKDLVNLNALESQLMYEVAGFEPQLKNH 87

  Fly   312 -----------DISAKDFRP----------RPDFNRANKPAATR-----VNEQGISRP----SPP 346
                       |::.:...|          :.|..:|..||...     |.|:...:|    |.|
  Fly    88 LILLPSGSWDGDVTKRFELPIKRVVVKKVMKSDGEKAKSPATGEKKKRVVGEKTKKKPASGSSSP 152

  Fly   347 AKPIAEIMRDQAEFLQRAEQNDEQLEK----ASKMWKRQAAEGDGLNATEDQELHFRILQLESKA 407
            :|.........|:....:|.:.|:..|    |:|:.|..:.:....:..|..||...|....:.:
  Fly   153 SKAKTTSEDSLAKTSISSESSPEKTSKIKTTAAKISKPGSEKAPRASPEECPELSTEINSKNTSS 217

  Fly   408 QDYI------VENNRLREELSRIQELHNVTQQLSQKEVEATRNIESKIRERQRLDEQHELERQER 466
            :..:      |.:....|.||.|:.    :..:.:.:.|....:     .:|:|.||.:|..|.|
  Fly   218 ESPVAKKTAKVTSKPTLELLSPIKP----SSPIKELDCEPVDTL-----SKQQLSEQLQLYPQGR 273

  Fly   467 ------------------ERL----LAIARETKKHYKSPTPSGP------PSPGRNLEDVHVVSD 503
                              |:|    ||:....     |||..||      |:...::|.|     
  Fly   274 NLISPVDDAPSDLFISDAEQLSDDDLALGASA-----SPTMLGPGYDYGAPTGDSDVEGV----- 328

  Fly   504 SLESLLQLTGDPDP-TIAPNKAEIPTFDRAMKPQPRNVE-RTSQRVR----DF---------SPV 553
                    ||..|| ||..:....|......:.:....| |..|||.    ||         :..
  Fly   329 --------TGVTDPSTIGTDDGTYPALSNFYRRKYGGDELRAWQRVNTTGADFVSSATTETEAEA 385

  Fly   554 IGQNVG-RGLTGLKNLGNTCYMNSILQCLSNTPQLTEYCISDKYKNYISRSNKTNGQVIEEVAAL 617
            ...::| ||..||.|...|||:||:||.|..||:         ::|.:.|....|....:.:...
  Fly   386 RQASLGPRGYVGLVNQAMTCYLNSLLQALFMTPE---------FRNALYRWEFDNDNEAKNIPYQ 441

  Fly   618 IKELW----NGQYKCVASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHVPRQRE 678
            :::|:    ......|.:.||....|           .||.|      .|...|:|.|    .|.
  Fly   442 LQKLFLNLQTSPKAAVETTDLTRSFG-----------WDSTE------AWQQHDIQEL----CRV 485

  Fly   679 MISASEKAWLEFTKAKE-SMILHLFYGQMKSTVKCVACHKESATYESFSNLSLELPP---NSNVC 739
            |..|.|.   :|...|: ::|.:|:.|:|...|||:.|:.|....::|.::.|.:.|   :|...
  Fly   486 MFDALEH---KFKNTKQANLISNLYEGKMNDYVKCLECNTEKTREDTFLDIPLPVRPFGSSSAYG 547

  Fly   740 QLNQCMDMYFSGERIHGWN---CPSCKTKRDAIKKLDISKLPPVLVVHLKRFYAD---------- 791
            .:.:.:..:...|.:.|.|   |..||.|.||.|.|.....|.:|.:|||||..|          
  Fly   548 SIEEALRAFVQPETLDGNNQYLCEKCKKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLN 612

  Fly   792 ------------------------------------PSNSGSYM----------------KKQNY 804
                                                .::|||.|                :.:|.
  Fly   613 DRVTFPQTLNLNTFINRSGNSGEQNSQLNGTVDDCSTADSGSAMEDDNLSSGVVTTASSSQHEND 677

  Fly   805 LRFPLENLDMNPYIARAESRAVTPKTYQLYAVSNHYGTMEGGHYTAFCKSANYGKWFKFDDQVVS 869
            |....|.:||:...:::..:...|..|:|:|:..|.|:..||||.|:.|..:..:||.|:||.|:
  Fly   678 LNDEDEGIDMSSSTSKSAKQGSGPYLYELFAIMIHSGSASGGHYYAYIKDFDNNEWFCFNDQNVT 742

  Fly   870 ALDSSNV-----------VSSA------AYILFY 886
            ::...::           .|||      ||:|.|
  Fly   743 SITQEDIQRSFGGPNGSYYSSAYTSSTNAYMLMY 776

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..113 CDD:286108
RHOD 148..278 CDD:294087 5/24 (21%)
UCH 562..886 CDD:278850 99/413 (24%)
Peptidase_C19R 564..887 CDD:239139 100/413 (24%)
Usp47NP_523937.2 TEBP_beta <119..234 CDD:254188 22/114 (19%)
Rib_recp_KP_reg 122..265 CDD:282899 28/151 (19%)
peptidase_C19C 394..780 CDD:239124 101/416 (24%)
UCH 395..776 CDD:278850 99/413 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45456848
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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