DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Usp8 and Usp14

DIOPT Version :10

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_609377.1 Gene:Usp14 / 34387 FlyBaseID:FBgn0032216 Length:475 Species:Drosophila melanogaster


Alignment Length:541 Identity:110/541 - (20%)
Similarity:178/541 - (32%) Gaps:220/541 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   451 ERQRL--------DEQHELERQERERLLAIARETKKHYKSPTPSGPPSPGRNLEDVHVVSDSLES 507
            :||::        |:|..|:.::...:|.:..      |...|..|.:|.:.:||:         
  Fly    42 DRQKVMCKGGILKDDQWNLQIKDGAVVLLLGS------KESVPEVPATPVKFIEDM--------- 91

  Fly   508 LLQLTGDPDPTIAPNKAEIPTFDRAMK-PQPRNVERTSQRVRDFSPVIGQNVGRGLTGLKNLGNT 571
                          |:||..|   ||: |                           .||.|||||
  Fly    92 --------------NEAEAAT---AMRLP---------------------------AGLTNLGNT 112

  Fly   572 CYMNSILQCLSNTPQL----------------TEYCISDKYKNYISRSNKTNGQVIEEVAALIKE 620
            ||||:.:|||:..|:|                |.:.||...|:..::..|  |..:..: .|::.
  Fly   113 CYMNATVQCLNAVPELRTALSTFSNDGTDTMSTAFSISSAMKSIFAQMEK--GTTVTPI-VLLQA 174

  Fly   621 LW-----------NGQYKCVASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHVP 674
            |.           ||.|:                      |||::|....::..|...|:    |
  Fly   175 LHRASPQFAQTGENGTYR----------------------QQDANECWAEILKMLQQKLR----P 213

  Fly   675 RQREMISASEKAWLEFTKAKESMILHLFYG---QMKSTVKCVACHKESATYESFSNLSLELPPNS 736
            :.:|..:..:|        :.|..:..|:|   ::|.:.:.......:.|.|:|..||       
  Fly   214 KNQEPSNTVQK--------RHSSFIDQFFGGTFEVKMSSEEDPDEPSTVTSENFLQLS------- 263

  Fly   737 NVCQLNQCMDMYFSGERIHGWNCPSCKTKRDAIKKLD-------------ISKLPPVLVVHLKRF 788
              |.::..:....||.:        .|.|...:||.:             :|:||..|.|...||
  Fly   264 --CFISMDVKYMQSGLK--------SKMKEQLVKKSETLGRDAKYIRTYLVSRLPAYLTVQFVRF 318

  Fly   789 YADPSNSGSYMKKQNYLRFP--------------------------LENLDMNPYIARAESRAVT 827
            .. ....|...|....::||                          ||:..|...:.:.......
  Fly   319 QY-KGKEGINAKVLKDIKFPIDFDAFELCTPELQNKLCPMRSKFKDLEDKKMEVDVVKRNEPNEE 382

  Fly   828 PKT-------------------YQLYAVSNHYG-TMEGGHYTAFCKSANYGKWFKFDDQVVSALD 872
            .|.                   |.|.||..|.| :...|||.|:.:|:. ..||||||..|||:.
  Fly   383 KKDVKYEQFWFDDDLGSNNSGYYTLQAVLTHKGRSSSSGHYVAWVRSSG-DVWFKFDDDEVSAVA 446

  Fly   873 SSNVVS-------SAAYILFY 886
            :..::.       ..||:|.|
  Fly   447 TDEILRLSGGGDWHCAYVLLY 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..114 CDD:462647
RHOD 148..278 CDD:444705
Smc <361..>511 CDD:440809 12/67 (18%)
Peptidase_C19R 564..887 CDD:239139 91/419 (22%)
Usp14NP_609377.1 Ubl_USP14_like 4..75 CDD:340521 6/38 (16%)
Peptidase_C19A 105..467 CDD:239122 90/417 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.