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Protein Alignment Usp8 and Usp7

DIOPT Version :9

Sequence 1:	NP_650948.2	Gene:	Usp8 / 42509	FlyBaseID:	FBgn0038862	Length:	896	Species:	Drosophila melanogaster
Sequence 2:	NP_572779.2	Gene:	Usp7 / 32169	FlyBaseID:	FBgn0030366	Length:	1129	Species:	Drosophila melanogaster

Alignment Length:	655	Identity:	165/655 - (25%)
Similarity:	231/655 - (35%)	Gaps:	206/655 - (31%)

- Green bases have known domain annotations that are detailed below.

  Fly   277 HCTNPSVQAPQQNNN----------DIETIDDIEYPSIHDITMKEDISAKDFRPRPDFNRANKPA 331
            |......|.|.:|.|          ...:..|.|...|.| ..|||    .||....|:.    .
  Fly    52 HAVGAVTQLPSENGNMPPQQLLADSSSTSFGDGEAMGIDD-ESKED----QFRSETTFSF----T 107

  Fly   332 ATRVNEQGISRPSPPAK------PIAEIMRDQA--EFLQRAEQNDEQLEKASKMWKRQAAEGDGL 388
            ...|.:....|.|||..      .|..|..|:|  .|||...:||      |..|...|.....|
  Fly   108 VENVVQLKSQRLSPPVYVRMLPWRIMVIPNDRALGFFLQCNGEND------SPTWSCNAIAELRL 166

  Fly   389 NATEDQELHF---RILQL-ESKAQDYIVENNRLREELSRIQELHNVTQQLSQKEVEATRNIESKI 449
            ...:.....|   ||..| .||..||...|              .:|.|
  Fly   167 KCHKPDAQPFTRARIKHLFYSKENDYGYSN--------------FITWQ---------------- 201

  Fly   450 RERQRLDEQHELERQERERLLAIARETKKHYKSPTPSGPPSPGRNLEDVHVVSDSLESLLQLTGD 514
                      ||:..|:..:         |..|.|          || ||||:|:
  Fly   202 ----------ELKDSEKSYV---------HNNSIT----------LE-VHVVADA---------- 226

  Fly   515 PDPTIAPNKAEIPTFDRAMKPQPRNVERTSQRVRDFSPVIGQNVGRGLTGLKNLGNTCYMNSILQ 579
                                  |..|...|::            ..|..||||.|.||||||:||
  Fly   227 ----------------------PHGVLWDSKK------------HTGYVGLKNQGATCYMNSLLQ 257

  Fly   580 CL--SNTPQLTEYCISDKYKNYISRSNKTNGQVIEEVAALIKELWNGQYKCVASRDLRYVVGQYQ 642
            .|  :|:.:|:.|.|..:..:    |:|:.|..::.|   ..||..|. :.|.::.|....|
  Fly   258 TLYFTNSLRLSVYRIPTEADD----SSKSVGLSLQRV---FHELQFGD-RPVGTKKLTKSFG--- 311

  Fly   643 KIFRGVD---QQDSHEFLTILMDWLHSDLQTLHVPRQREMISASEKAWLEFTKAKESMILHLFYG 704
              :..:|   |.|..|||.:|:|.|.|.::...:                     |..|..||.|
  Fly   312 --WETLDSFMQHDVQEFLRVLLDKLESKMKGTIL---------------------EGTIPGLFEG 353

  Fly   705 QMKSTVKCVACHKESATYESFSNLSLELPPNSNVCQLNQCMDMYFSGERIHGWNCPSCKTK--RD 767
            :|.|.:||......|..||:|.::.|.:....|:.:..|   .|.:.|.:.|.|.......  ::
  Fly   354 KMSSYIKCKNVDYNSTRYETFYDIQLNIKDKKNIYESFQ---DYVAPETLEGDNKYDAGVHGLQE 415

  Fly   768 AIKKLDISKLPPVLVVHLKRFYADPSNSGSYMKKQNYLRFPLENLDMNPYIARAESRAVTPKTYQ 832
            |.|.:..:..||||.:||.||..||....| :|..:...| .|:::::.|:|.:|:   |...|.
  Fly   416 ASKGVIFTSFPPVLHLHLMRFQYDPVTDSS-IKYNDRFEF-YEHINLDRYLAESEN---TLADYV 475

  Fly   833 LYAVSNHYGTMEGGHYTAFCKSANYGKWFKFDDQVVSALDSSNVVS----------------SAA 881
            |:||..|.|...||||..|......|:||||||.|||:......:.                |.|
  Fly   476 LHAVLVHSGDNHGGHYVVFINPKADGRWFKFDDDVVSSCRKQEAIEQNYGGMDDEISFHAKCSNA 540

  Fly   882 YILFY 886
            |:|.|
  Fly   541 YMLVY 545

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.