DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp8 and usp-33

DIOPT Version :10

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:NP_510570.2 Gene:usp-33 / 181647 WormBaseID:WBGene00010702 Length:716 Species:Caenorhabditis elegans


Alignment Length:418 Identity:104/418 - (24%)
Similarity:163/418 - (38%) Gaps:108/418 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   541 ERTSQRVRDFSPVIGQNVGRGLTGLKNLGNTCYMNSILQCLSNTPQLTEYCIS----DKYKNYIS 601
            ::..|..|...|:    ..|||.|..|.|||||||::||.|.:....|:|.|.    ..:.|...
 Worm   164 DKVEQETRKMEPL----AFRGLLGYLNFGNTCYMNAVLQLLGHCSPFTQYLIELIPPGGWSNCSH 224

  Fly   602 RSNKTNGQVIEEVAALIKEL---WNGQYKCVASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDW 663
            ...||..|:..::..:..:.   :...:|.:.      .|......|....|||:.||:..|:|.
 Worm   225 DIPKTAIQMALDLRNMYSDFPLPYLSPWKIIT------CVRNEMPGFECFQQQDASEFMRNLLDI 283

  Fly   664 LHSDLQT-----------------------LHVPRQREMISASEKAWLEFTKAKESMILHLFYGQ 705
            |..||:|                       ::.|..:..|||                  :|.|.
 Worm   284 LDRDLKTCSEYHRTNTLIEMGNPEMDYAIAMNAPHTKTAISA------------------IFQGV 330

  Fly   706 MKSTVKCVACHKESATYESFSNLS-----------------LELP----PNSNV----------- 738
            :::.::|.:|...|.|.|:|.:||                 |:.|    .:||:           
 Worm   331 LENQIQCHSCGFRSRTIENFLDLSIPIVGENEFEEMYASKKLDTPKAPCTSSNIEDGQDPGFLVH 395

  Fly   739 ------CQLNQCMDMYFSGERI---HGWNCPSCKTKRDAIKKLDISKLPPVLVVHLKRFYADPSN 794
                  ..|..|:|.:|....:   :.::|..|:...||.|.....:||.|:::.||||......
 Worm   396 QGAFNKTSLESCLDRFFQNSTLQDDNQYSCSKCEVLVDATKSTKAHRLPEVIIIQLKRFRHTMFG 460

  Fly   795 SGSYMKKQNYLRFPLENLDMNPYIARAESRAVTPKTYQLYAVSNHYG-TMEGGHYTAFCKSANYG 858
            |   .|....:.|||.:.|...:....|     |..|.|.....|.| ::|.|||.::|:.....
 Worm   461 S---CKVGKVVEFPLRSQDFGRWTTSGE-----PALYDLVGFVVHEGRSLEFGHYVSYCRHEQDN 517

  Fly   859 KWFKFDDQVVSALDSSNVVSSAAYILFY 886
            :|:||||.||:..|::.|..|..|||.|
 Worm   518 QWYKFDDMVVTRCDATQVAKSQPYILMY 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..114 CDD:462647
RHOD 148..278 CDD:444705
Smc <361..>511 CDD:440809
Peptidase_C19R 564..887 CDD:239139 98/395 (25%)
usp-33NP_510570.2 UCH 183..545 CDD:425685 97/393 (25%)
Blue background indicates that the domain is not in the aligned region.

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