DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp8 and not

DIOPT Version :10

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:XP_061518450.1 Gene:not / 1280557 VectorBaseID:AGAMI1_014478 Length:619 Species:Anopheles gambiae


Alignment Length:469 Identity:110/469 - (23%)
Similarity:178/469 - (37%) Gaps:156/469 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   561 GLTGLKNLGNTCYMNSILQCLSNTPQLTEYCISDKYKNYISRSNKTNGQVIEEVAALIKELWNGQ 625
            ||.||.|||:||:||.|:|.|.:||.|.:|.:::.::.....:.|.   ::.||:.|.:|.::|.
Mosquito   156 GLRGLLNLGSTCFMNCIVQALIHTPLLRDYFLAELHECTAKTAAKC---LVCEVSRLFQEFYSGA 217

  Fly   626 YKCVASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQT-------------------- 670
            ...::...|.:::..:.:...|.:|||:|||....:|.||...:|                    
Mosquito   218 RGPLSLHRLLHLIWNHARHLAGYEQQDAHEFFIATLDVLHRHCKTSMKEQAAKAAAAAAAAAAAA 282

  Fly   671 ---------------LHVPRQRE------------------MISASEKAWLEFTKAKES------ 696
                           .|.|.|..                  :..:...|....|...:|      
Mosquito   283 AATDKSKSSSSTQPNSHQPMQHSGSNYLQQQGAAQQDGAGALAQSGPNALPLSTAGNQSQGGANT 347

  Fly   697 -----------------MILHLFYGQMKSTVKCVACHKESATYESFSNLSLEL------------ 732
                             :|..:|.|.::|.|.|.||:..|.|.:.|.::||:|            
Mosquito   348 ATGTANQAEPNQTQCNCIIDQIFTGGLQSDVVCQACNGVSTTIDPFWDISLDLGESSNGQGGYGG 412

  Fly   733 PPNSNVCQLNQCMDMYFSGERIHG---WNCPSCKTKRDAIKKLDISKLPPVLVVHLKRFYADPSN 794
            ||.|    |..|::.:...|.:..   ..|..|.:.:::.|:|.:..||.|...|||||    .:
Mosquito   413 PPRS----LIDCLERFTRAEHLGSSAKIKCNKCNSYQESTKQLSMRTLPIVASFHLKRF----EH 469

  Fly   795 SGSYMKK-QNYLRFPLENLDMNPYIARAES----------------------------------- 823
            |....|| ..::.||.| |||.|::::..|                                   
Mosquito   470 SSLIDKKISTFISFPAE-LDMTPFMSQIMSDQQQQQQQQQSAVPHSPSSSSSNFNERTGGANGSS 533

  Fly   824 ----------------RAVTPKTYQLYAVSNHYGTMEGGHYTAFCKSANYGKWFKFDDQVVSALD 872
                            ::.|...|.||||.||.||::.|||||:.:... ..|.|.||.:::...
Mosquito   534 TGTSLNSDSTARLPVDKSTTDFRYSLYAVINHVGTLDAGHYTAYVRHQK-DIWVKCDDHIITTAT 597

  Fly   873 SSNVVSSAAYILFY 886
            ...|:.|..|:|||
Mosquito   598 LQQVLDSEGYLLFY 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..114 CDD:462647
RHOD 148..278 CDD:444705
Smc <361..>511 CDD:440809
Peptidase_C19R 564..887 CDD:239139 108/466 (23%)
notXP_061518450.1 None
Blue background indicates that the domain is not in the aligned region.

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