DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp8 and usp2

DIOPT Version :9

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:XP_012821651.1 Gene:usp2 / 100216064 XenbaseID:XB-GENE-962796 Length:564 Species:Xenopus tropicalis


Alignment Length:482 Identity:155/482 - (32%)
Similarity:247/482 - (51%) Gaps:72/482 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   420 ELSRIQELHNVTQQLSQKEVEATRNIESKIRERQRLDEQHELERQERERL--LAIARETKKHYKS 482
            ||......::.:..|:...:||..|.  ::.....|.:..::..::|...  ..|:|.|   .:.
 Frog   131 ELRASDTYYSPSPALTCSRLEADGNY--RVSRTTNLSDVSDIYGKKRGSTNGYGISRTT---VQD 190

  Fly   483 PTPSGPPSPGRNLEDVHVVSDSLESLLQLTGDPDPTIAPNKAEIPTFDRAMKPQPRNVERTSQRV 547
            |.||.|.|                               |...:.::|:..:|..:. |::|:.|
 Frog   191 PAPSSPKS-------------------------------NTRFLYSYDKKEEPSSKE-EKSSKHV 223

  Fly   548 RDFSPVIGQNVGRGLTGLKNLGNTCYMNSILQCLSNTPQLTEYCISDKYKNYISRSNKTNGQVIE 612
                        :||.||:||||||:|||||||||||..|.:||:.:.|:..:| |.|.|..::|
 Frog   224 ------------QGLVGLRNLGNTCFMNSILQCLSNTKDLRDYCLQNSYRRDLS-SKKCNTAIME 275

  Fly   613 EVAALIKELW-NGQYKCVASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHV--- 673
            |.|.|::.:| :...:.|:..:.:..:.:|...|.|.:|||:.|||..|:|.||:::..:.|   
 Frog   276 EFARLLQAIWTSSANEVVSPSEFKTQIQKYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVTVKPR 340

  Fly   674 PRQREM--ISASEKA---WLEFTKAKESMILHLFYGQMKSTVKCVACHKESATYESFSNLSLELP 733
            |..:::  :..|||.   |..:.:.::|.|:.||.||:||::.|..|...|..::.|.:|||.:.
 Frog   341 PSSQDLDHMPDSEKGKHMWKRYLEREDSRIVELFVGQLKSSLTCTECGYCSTVFDPFWDLSLPIA 405

  Fly   734 PNS-NVCQLNQCMDMYFSGERIHG---WNCPSCKTKRDAIKKLDISKLPPVLVVHLKRFYADPSN 794
            ..| :...|..||.::...:.:.|   ..|..||.:|...||..|.|.|.:||:|||||......
 Frog   406 KKSASEVSLVDCMRLFTKEDVLDGDEKPTCCRCKARRRCTKKFTIQKFPKILVLHLKRFSEGRIR 470

  Fly   795 SGSYMKKQNYLRFPLENLDMNPYIARAESRAVTPKTYQLYAVSNHYGTMEGGHYTAFCKSANYGK 859
            ||   |...::.|||::||:..:.:.:...|    ||.|||||||.||..||||||:||:.:.|:
 Frog   471 SG---KLSTFVNFPLKDLDLREFSSESNPHA----TYNLYAVSNHSGTTMGGHYTAYCKNPSNGE 528

  Fly   860 WFKFDDQVVSALDSSNVVSSAAYILFY 886
            |:.|:|..|:|:.|:.|.||.||:|||
 Frog   529 WYTFNDSRVTAMSSNQVRSSDAYVLFY 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..113 CDD:286108
RHOD 148..278 CDD:294087
UCH 562..886 CDD:278850 130/336 (39%)
Peptidase_C19R 564..887 CDD:239139 131/336 (39%)
usp2XP_012821651.1 UCH 227..555 CDD:366104 129/335 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D469048at33208
OrthoFinder 1 1.000 - - FOG0000821
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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