DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp8 and usp2

DIOPT Version :10

Sequence 1:NP_650948.2 Gene:Usp8 / 42509 FlyBaseID:FBgn0038862 Length:896 Species:Drosophila melanogaster
Sequence 2:XP_012821651.1 Gene:usp2 / 100216064 XenbaseID:XB-GENE-962796 Length:564 Species:Xenopus tropicalis


Alignment Length:482 Identity:155/482 - (32%)
Similarity:247/482 - (51%) Gaps:72/482 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   420 ELSRIQELHNVTQQLSQKEVEATRNIESKIRERQRLDEQHELERQERERL--LAIARETKKHYKS 482
            ||......::.:..|:...:||..|.  ::.....|.:..::..::|...  ..|:|.|   .:.
 Frog   131 ELRASDTYYSPSPALTCSRLEADGNY--RVSRTTNLSDVSDIYGKKRGSTNGYGISRTT---VQD 190

  Fly   483 PTPSGPPSPGRNLEDVHVVSDSLESLLQLTGDPDPTIAPNKAEIPTFDRAMKPQPRNVERTSQRV 547
            |.||.|.|                               |...:.::|:..:|..:. |::|:.|
 Frog   191 PAPSSPKS-------------------------------NTRFLYSYDKKEEPSSKE-EKSSKHV 223

  Fly   548 RDFSPVIGQNVGRGLTGLKNLGNTCYMNSILQCLSNTPQLTEYCISDKYKNYISRSNKTNGQVIE 612
                        :||.||:||||||:|||||||||||..|.:||:.:.|:..:| |.|.|..::|
 Frog   224 ------------QGLVGLRNLGNTCFMNSILQCLSNTKDLRDYCLQNSYRRDLS-SKKCNTAIME 275

  Fly   613 EVAALIKELW-NGQYKCVASRDLRYVVGQYQKIFRGVDQQDSHEFLTILMDWLHSDLQTLHV--- 673
            |.|.|::.:| :...:.|:..:.:..:.:|...|.|.:|||:.|||..|:|.||:::..:.|   
 Frog   276 EFARLLQAIWTSSANEVVSPSEFKTQIQKYAPRFMGYNQQDAQEFLRFLLDGLHNEVNRVTVKPR 340

  Fly   674 PRQREM--ISASEKA---WLEFTKAKESMILHLFYGQMKSTVKCVACHKESATYESFSNLSLELP 733
            |..:::  :..|||.   |..:.:.::|.|:.||.||:||::.|..|...|..::.|.:|||.:.
 Frog   341 PSSQDLDHMPDSEKGKHMWKRYLEREDSRIVELFVGQLKSSLTCTECGYCSTVFDPFWDLSLPIA 405

  Fly   734 PNS-NVCQLNQCMDMYFSGERIHG---WNCPSCKTKRDAIKKLDISKLPPVLVVHLKRFYADPSN 794
            ..| :...|..||.::...:.:.|   ..|..||.:|...||..|.|.|.:||:|||||......
 Frog   406 KKSASEVSLVDCMRLFTKEDVLDGDEKPTCCRCKARRRCTKKFTIQKFPKILVLHLKRFSEGRIR 470

  Fly   795 SGSYMKKQNYLRFPLENLDMNPYIARAESRAVTPKTYQLYAVSNHYGTMEGGHYTAFCKSANYGK 859
            ||   |...::.|||::||:..:.:.:...|    ||.|||||||.||..||||||:||:.:.|:
 Frog   471 SG---KLSTFVNFPLKDLDLREFSSESNPHA----TYNLYAVSNHSGTTMGGHYTAYCKNPSNGE 528

  Fly   860 WFKFDDQVVSALDSSNVVSSAAYILFY 886
            |:.|:|..|:|:.|:.|.||.||:|||
 Frog   529 WYTFNDSRVTAMSSNQVRSSDAYVLFY 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp8NP_650948.2 USP8_dimer 2..114 CDD:462647
RHOD 148..278 CDD:444705
Smc <361..>511 CDD:440809 16/92 (17%)
Peptidase_C19R 564..887 CDD:239139 131/336 (39%)
usp2XP_012821651.1 UCH 227..555 CDD:425685 129/335 (39%)
Blue background indicates that the domain is not in the aligned region.

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