DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slmb and BTRC

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_006718117.1 Gene:BTRC / 8945 HGNCID:1144 Length:732 Species:Homo sapiens


Alignment Length:503 Identity:394/503 - (78%)
Similarity:443/503 - (88%) Gaps:7/503 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 METDKIMDETN-SNAQAFTTTMLYDPVRKKDSSPTYQTERELCFQYFTQWSESGQVDFVEHLLSR 67
            |:|:..:.:|. :|.   |::|:....||..:|  |:.|:|||.:||.|||||.||:|||||:|:
Human   227 MKTENCVAKTKLANG---TSSMIVPKQRKLSAS--YEKEKELCVKYFEQWSESDQVEFVEHLISQ 286

  Fly    68 MCHYQHGQINAYLKPMLQRDFITLLPIKGLDHIAENILSYLDAESLKSSELVCKEWLRVISEGML 132
            |||||||.||:||||||||||||.||.:|||||||||||||||:||.::|||||||.||.|:|||
Human   287 MCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 351

  Fly   133 WKKLIERKVRTDSLWRGLAERRNWMQYLFKPRPGQ-TQRPHSFHRELFPKIMNDIDSIENNWRTG 196
            |||||||.||||||||||||||.|.|||||.:|.. ...|:||:|.|:|||:.||::||:|||.|
Human   352 WKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCG 416

  Fly   197 RHMLRRINCRSENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYDDK 261
            ||.|:||:||||.|||||||||||.|||||||||||||||:..|:|.:.|.||||||||||||::
Human   417 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 481

  Fly   262 VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMTSPSEITLR 326
            |||:|||||||||||||||||:||||||||||||||||||||||||||||||||||.||::||||
Human   482 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 546

  Fly   327 RVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSS 391
            ||||||||||||||||:|||||||||||||||:||:|||||||||||||||||||||||||||||
Human   547 RVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSS 611

  Fly   392 DNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCLN 456
            ||:||||||||||||||||||||||||||||.|||||||||||||||||||||||||.:.||||.
Human   612 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR 676

  Fly   457 TLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNFTPNENKTGRTPS 504
            |||||:|||||||||||||||||||||||||||||....:.:..|:||
Human   677 TLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPS 724

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 29/37 (78%)
F-box-like 89..136 CDD:289689 36/46 (78%)
WD40 <192..495 CDD:225201 269/302 (89%)
WD40 210..488 CDD:238121 251/277 (91%)
WD40 repeat 213..248 CDD:293791 26/34 (76%)
WD40 repeat 254..288 CDD:293791 29/33 (88%)
WD40 repeat 293..330 CDD:293791 33/36 (92%)
WD40 repeat 337..370 CDD:293791 29/32 (91%)
WD40 repeat 376..410 CDD:293791 32/33 (97%)
WD40 repeat 416..459 CDD:293791 37/42 (88%)
WD40 repeat 465..487 CDD:293791 21/21 (100%)
BTRCXP_006718117.1 Beta-TrCP_D 266..304 CDD:288940 29/37 (78%)
F-box-like 308..355 CDD:289689 36/46 (78%)
WD40 <417..713 CDD:225201 265/295 (90%)
WD40 430..708 CDD:238121 251/277 (91%)
WD40 repeat 433..468 CDD:293791 26/34 (76%)
WD40 repeat 474..508 CDD:293791 29/33 (88%)
WD40 repeat 513..550 CDD:293791 33/36 (92%)
WD40 repeat 557..590 CDD:293791 29/32 (91%)
WD40 repeat 596..630 CDD:293791 32/33 (97%)
WD40 repeat 636..679 CDD:293791 37/42 (88%)
WD40 repeat 685..707 CDD:293791 21/21 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165147628
Domainoid 1 1.000 106 1.000 Domainoid score I6577
eggNOG 1 0.900 - - E1_KOG0281
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H39330
Inparanoid 1 1.050 807 1.000 Inparanoid score I496
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48038
OrthoDB 1 1.010 - - D150270at33208
OrthoFinder 1 1.000 - - FOG0002886
OrthoInspector 1 1.000 - - otm41392
orthoMCL 1 0.900 - - OOG6_102978
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 1 1.000 - - X2712
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.700

Return to query results.
Submit another query.