Protein Alignment slmb and AT5G51980

DIOPT Version :10

• Sequence 1: NP_001262802.1
• Gene: slmb / 42504
• FlyBaseID: FBgn0283468
• Length: 597
• Species: Drosophila melanogaster
• Sequence 2: NP_200011.1
• Gene: AT5G51980 / 835273
• AraportID: AT5G51980
• Length: 437
• Species: Arabidopsis thaliana
• Alignment Length: 387
• Identity: 94/387 - (24%)
• Similarity: 146/387 - (37%)
• Gaps: 88/387 - (22%)

  Fly   147 WRGLAERRNWMQYLFK----PRPGQTQRP-----------------------------HSFHREL 178
            ||.....|:...||.:    |.|||.|.|                             .|:.|..
plant    39 WRAGRCNRSPCPYLHRELPGPGPGQGQGPGYTNKRVAEESGFAGPSHRRGPGFNGNSSSSWGRFG 103

  Fly   179 FPKIMNDIDSIENNWRTGR----HMLRRINCRSENSKGVYCLQYD-DGKIVSGL----------- 227
            ..:.:...:.:.|.|..|.    ...|.::|.|:........|.| ..|:|||:
plant   104 GNRTVTKTEKVCNFWVDGNCTYGDKCRYLHCWSKGESFALLTQLDGHEKLVSGIALPSGSDKLYT 168

  Fly   228 --RDNTIKIWDRTDLQCVKTL-MGHTGSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHH 289
              :|.|:::||....||...| :|  |.:.|:..:...::.| ..:.|:.|::.| ....:|...
plant   169 GSKDETLRVWDCASGQCTGVLKLG--GEIGCVLSEGPWLLVG-MPNLVKAWNIET-NADQSLSGP 229

  Fly   290 CEAVLHLRFNNGMMVTCSKDRSIAVW------DMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVS 348
            ...|..|.....::...::|.||..|      :...||     ..|.||..||..:......:.|
plant   230 VGQVYSLVVGTDLLFAGTQDGSILAWRYNAATNCFEPS-----ASLTGHTLAVVTLYVGANRLYS 289

  Fly   349 ASGDRTIKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNSIRLWDIECGACLRVLEGHE 413
            .|.|:||||||..:.:.::||..|...:..|...|:.::|.|.||::::|....|..|.|...|:
plant   290 GSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHK 354

  Fly   414 E----LVRCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCLNTLVEHT--GRVFRLQ 469
            |    |..|          |.:|.:.|...|.|..|     |||.|..|...|  |::|..|
plant   355 EEHGVLALC----------GVHDAEAKPVLLCACND-----NTLRLYDLPSFTERGKIFAKQ 401

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
slmb	NP_001262802.1	Beta-TrCP_D	47..85	CDD:463465
		F-box_FBXW1B	85..135	CDD:438954
		WD40	210..488	CDD:238121	75/287 (26%)
		WD40 repeat	213..248	CDD:293791	13/49 (27%)
		WD40 repeat	254..288	CDD:293791	6/33 (18%)
		WD40 repeat	293..330	CDD:293791	8/42 (19%)
		WD40 repeat	337..370	CDD:293791	10/32 (31%)
		WD40 repeat	376..410	CDD:293791	10/33 (30%)
		WD40 repeat	416..459	CDD:293791	11/42 (26%)
		WD40 repeat	465..487	CDD:293791	2/5 (40%)
AT5G51980	NP_200011.1	zf_CCCH_4	115..133	CDD:465719	4/17 (24%)
		WD40	143..427	CDD:475233	75/283 (27%)
		WD40 repeat	196..228	CDD:293791	6/33 (18%)
		WD40 repeat	233..271	CDD:293791	8/42 (19%)
		WD40 repeat	279..311	CDD:293791	10/31 (32%)
		WD40 repeat	318..352	CDD:293791	10/33 (30%)
		WD40 repeat	359..399	CDD:293791	15/54 (28%)
		WD40 repeat	403..426	CDD:293791