DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slmb and ZFWD1

DIOPT Version :10

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_194274.2 Gene:ZFWD1 / 828649 AraportID:AT4G25440 Length:430 Species:Arabidopsis thaliana


Alignment Length:462 Identity:105/462 - (22%)
Similarity:155/462 - (33%) Gaps:162/462 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 PTYQTERELCFQYFTQWSESGQVDFVEHLLSRMCHYQHGQINAYLKPMLQRDFITLLPIKGLDHI 100
            ||..:.:::||                       |::.|:.|.|..|.|.|:    ||..|...:
plant    23 PTTDSNQKVCF-----------------------HWRAGRCNRYPCPYLHRE----LPGPGSGPV 60

  Fly   101 AENILSYLDAESLKSSELVCKEWLRVISEGMLWKKLIERKVRTDSLWRGLAERRNWMQYLFKPRP 165
            |        |.|                         .::|..:|.:.|.:.||.         |
plant    61 A--------ASS-------------------------NKRVADESGFAGPSHRRG---------P 83

  Fly   166 GQTQRPHSFHRELFPKIMNDIDSIENNWRTGRHMLRRINCRSENSKGVYCLQYDDGKIVSGLRDN 230
            |                   .....|||  ||....|...::|.    .|..:.||....|.:..
plant    84 G-------------------FSGTANNW--GRFGGNRTVTKTEK----LCKFWVDGNCPYGDKCR 123

  Fly   231 TIKIWDRTD-LQCVKTLMGH----TGSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHHC 290
            .:..|.:.| ...:..|.||    ||  :.|......:.:.|.|.|||:||..:|:        |
plant   124 YLHCWSKGDSFSLLTQLDGHQKVVTG--IALPSGSDKLYTASKDETVRIWDCASGQ--------C 178

  Fly   291 EAVLHLRFNNGMMVTCSKDRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTI 355
            ..||:|....|.::      |...|            :|||.                   ...:
plant   179 TGVLNLGGEVGCII------SEGPW------------LLVGM-------------------PNLV 206

  Fly   356 KVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNSIRLW----DIECGACLRVLEGHEELV 416
            |.|:..:...: :|||....:..|.....|:.:|:.|.||.:|    ...|......|.||...|
plant   207 KAWNIQNNADL-SLNGPVGQVYSLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASLLGHTLAV 270

  Fly   417 RCIRFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCLNTLVEHTGRVFRL-QFDEFQIVSSSH 480
            ..:.....|:.|||.|..||||.|         .|..|:.||.|||..|..| .:|:| ::|.|.
plant   271 VSLYVGANRLYSGAMDNSIKVWSL---------DNLQCIQTLTEHTSVVMSLICWDQF-LLSCSL 325

  Fly   481 DDTILIW 487
            |:|:.||
plant   326 DNTVKIW 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:463465 5/37 (14%)
F-box_FBXW1B 85..135 CDD:438954 7/49 (14%)
WD40 210..488 CDD:238121 74/288 (26%)
WD40 repeat 213..248 CDD:293791 7/35 (20%)
WD40 repeat 254..288 CDD:293791 9/33 (27%)
WD40 repeat 293..330 CDD:293791 6/36 (17%)
WD40 repeat 337..370 CDD:293791 2/32 (6%)
WD40 repeat 376..410 CDD:293791 8/37 (22%)
WD40 repeat 416..459 CDD:293791 14/42 (33%)
WD40 repeat 465..487 CDD:293791 8/22 (36%)
ZFWD1NP_194274.2 zf_CCCH_4 108..126 CDD:465719 4/17 (24%)
WD40 136..423 CDD:441893 68/255 (27%)
WD40 repeat 148..186 CDD:293791 15/47 (32%)
WD40 repeat 188..264 CDD:293791 19/113 (17%)
WD40 repeat 272..304 CDD:293791 13/40 (33%)
WD40 repeat 311..345 CDD:293791 9/23 (39%)
WD40 repeat 352..392 CDD:293791
WD40 repeat 396..419 CDD:293791
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.