DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slmb and daw1

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001037817.1 Gene:daw1 / 556760 ZFINID:ZDB-GENE-050419-255 Length:418 Species:Danio rerio


Alignment Length:450 Identity:119/450 - (26%)
Similarity:200/450 - (44%) Gaps:66/450 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 LSRM--CHYQHGQINAYLK-PMLQRDFITLLPIKGLDHIAENILSYLDAESLKSSELVCKEWLRV 126
            |.||  .:|..|....|.| ..|:...|.||.:.....:.|.:|....||.|.:|.  |.|.:: 
Zfish     3 LKRMHIRYYPPGIFLDYEKGGQLRTKCIDLLNLTPETDVEELVLEIRAAEPLITSS--CVEQVK- 64

  Fly   127 ISEGMLWKKLIERKVRTDSLWRGLAERRNWMQYLFKPRPGQTQRPH-------SFHRELFPKIMN 184
                :|..||.|:..:.|       ||:   .|||:     ..:.|       :|::.....|..
Zfish    65 ----LLICKLQEKVSQKD-------ERK---FYLFR-----ALQAHILPLTNVAFNKSGSCFITG 110

  Fly   185 DIDSIENNWRTGRHMLRRINCRSENSKGVYCLQYDD---GKIVSGLRDNTIKIWDRTDLQCVKTL 246
            ..|.....|.|...  ..::....:...||.:.:::   .|:.:|..|.|.|:|.....:|..|.
Zfish   111 SYDRTCKIWDTASG--EELHTLEGHRNVVYAIAFNNPYGDKVATGSFDKTCKLWSAETGKCFYTF 173

  Fly   247 MGHTGSVLCLQYDDK--VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFN--NGMMVTCS 307
            .|||..::||.::.:  ::.:||.|:|.::|||.:||.|:||..|...::.|.||  ...:||.|
Zfish   174 RGHTAEIVCLAFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGS 238

  Fly   308 KDRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWSTSSCEFVRTLN 370
            .|.:..:||:.|..::   .||.|||..::.|.|  |...|.:||.|::.|||.....:.:.||.
Zfish   239 FDHTAILWDVPSGRKV---HVLSGHRGEISCVQFNWDCSLIATASLDKSCKVWDAEGGQCLATLL 300

  Fly   371 GHKRGI--ACLQYRDRLVVSGSSDNSIRLWDIECGACLRVLEGHE-ELVR-CIRFDTKRIVSGAY 431
            ||...:  .|..|..:|:.:.|:|.:.|::..:...||..||||: |:.: |......|:::.:.
Zfish   301 GHNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASV 365

  Fly   432 DGKIKVWDLVAALDPRAASNTLCLNTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLN 491
            |...:||         ......||..|..|:..:|...|       :...|||:..::::
Zfish   366 DKTSRVW---------CVKTGACLQVLEGHSDEIFSCAF-------NYEGDTIITGNYIH 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 7/22 (32%)
F-box-like 89..136 CDD:289689 12/46 (26%)
WD40 <192..495 CDD:225201 86/312 (28%)
WD40 210..488 CDD:238121 84/290 (29%)
WD40 repeat 213..248 CDD:293791 10/37 (27%)
WD40 repeat 254..288 CDD:293791 14/35 (40%)
WD40 repeat 293..330 CDD:293791 11/38 (29%)
WD40 repeat 337..370 CDD:293791 11/34 (32%)
WD40 repeat 376..410 CDD:293791 8/35 (23%)
WD40 repeat 416..459 CDD:293791 7/43 (16%)
WD40 repeat 465..487 CDD:293791 5/21 (24%)
daw1NP_001037817.1 CEP19 4..>81 CDD:291594 24/90 (27%)
WD40 84..372 CDD:238121 81/297 (27%)
WD40 88..405 CDD:225201 90/337 (27%)
WD 1 90..129 6/40 (15%)
WD40 repeat 95..132 CDD:293791 5/38 (13%)
WD 2 132..172 9/39 (23%)
WD40 repeat 137..175 CDD:293791 10/37 (27%)
WD 3 175..214 15/38 (39%)
WD40 repeat 181..217 CDD:293791 14/35 (40%)
WD 4 217..256 11/41 (27%)
WD40 repeat 222..258 CDD:293791 11/38 (29%)
WD 5 259..298 13/38 (34%)
WD40 repeat 265..300 CDD:293791 11/34 (32%)
WD 6 301..340 10/38 (26%)
WD40 repeat 306..342 CDD:293791 8/35 (23%)
WD 7 343..384 10/49 (20%)
WD40 repeat 348..384 CDD:293791 7/44 (16%)
WD40 376..>405 CDD:197651 9/35 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

Return to query results.
Submit another query.