DRSC/TRiP Functional Genomics Resources

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Protein Alignment slmb and CG7568

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_001263071.1 Gene:CG7568 / 43482 FlyBaseID:FBgn0039673 Length:482 Species:Drosophila melanogaster


Alignment Length:289 Identity:81/289 - (28%)
Similarity:125/289 - (43%) Gaps:61/289 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   207 SENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQY---DDKVIISGSS 268
            |.|:...:.:.:.| |||:|..|.|.|:|..|..|.:.|..|||..::..::   |.|.|.:.|.
  Fly   182 SGNNLTTFSIIFSD-KIVTGSFDGTAKVWSATSGQSLCTFYGHTAELVAAEFHPVDGKSIATASL 245

  Fly   269 DSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMTSPSEITLRRVLVG 331
            |.:.|::||.|...:..|.||...|:..|||..  |::|.|.|.|.|:||:.|.|   |...|.|
  Fly   246 DGSARIYDVETSHELQQLTHHGAEVIAARFNRDGQMLLTGSFDHSAAIWDVRSKS---LGHQLRG 307

  Fly   332 HRAAVN--VVDFDEKYIVSASGDRTIKVWST---------------------------------S 361
            |.|.::  |.:|....|.:.|.|.|.::|.|                                 |
  Fly   308 HSAELSNCVWNFSGSLIATGSLDNTARIWDTRKLDQELYLAARHSDEVLDVSFDAAGQLLATCSS 372

  Fly   362 SC-------------EFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNSIRLWDIECGACLRVLEG 411
            .|             |.:..:.||...::  |......::::.|:||:.|||..|.|.|.:||.|
  Fly   373 DCTARVWRLEGSSELEMLSLMAGHSDEVSKVCFSPSGCMLLTASADNTARLWLTESGQCSQVLAG 437

  Fly   412 HE-ELVRC-IRFDTKRIVSGAYDGKIKVW 438
            || |:..| ..:....|::.:.|...:.|
  Fly   438 HEGEVFSCAYSYAGDAILTASKDNSCRFW 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940
F-box-like 89..136 CDD:289689
WD40 <192..495 CDD:225201 81/289 (28%)
WD40 210..488 CDD:238121 79/286 (28%)
WD40 repeat 213..248 CDD:293791 12/34 (35%)
WD40 repeat 254..288 CDD:293791 10/36 (28%)
WD40 repeat 293..330 CDD:293791 15/38 (39%)
WD40 repeat 337..370 CDD:293791 11/80 (14%)
WD40 repeat 376..410 CDD:293791 11/35 (31%)
WD40 repeat 416..459 CDD:293791 4/24 (17%)
WD40 repeat 465..487 CDD:293791
CG7568NP_001263071.1 WD40 93..466 CDD:225201 80/287 (28%)
WD40 repeat 122..158 CDD:293791
WD40 154..467 CDD:238121 81/289 (28%)
WD40 repeat 189..222 CDD:293791 12/33 (36%)
WD40 repeat 228..265 CDD:293791 10/36 (28%)
WD40 repeat 270..306 CDD:293791 15/38 (39%)
WD40 repeat 314..348 CDD:293791 8/33 (24%)
WD40 repeat 355..393 CDD:293791 3/37 (8%)
WD40 repeat 400..436 CDD:293791 11/35 (31%)
WD40 repeat 442..466 CDD:293791 3/23 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR44156
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 00.000 Not matched by this tool.
22.130

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