DRSC/TRiP Functional Genomics Resources

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Protein Alignment slmb and fbxw11b

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:NP_998669.2 Gene:fbxw11b / 406825 ZFINID:ZDB-GENE-040426-2903 Length:531 Species:Danio rerio


Alignment Length:524 Identity:384/524 - (73%)
Similarity:440/524 - (83%) Gaps:24/524 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 MET---DKIMDETNSNAQ------------AFTTTMLYDPV--------RKKDSSPTYQTERELC 45
            |||   ||.:::.|::..            ...:|.:...|        ||:.|...|:.|:::|
Zfish     1 METEMEDKTLEQMNTSVMDPQTADRSPKITLIKSTFICPQVSNGPLTGSRKRPSEGNYEKEKDVC 65

  Fly    46 FQYFTQWSESGQVDFVEHLLSRMCHYQHGQINAYLKPMLQRDFITLLPIKGLDHIAENILSYLDA 110
            .|.|.||||:.||:|||||:|||||||||.||:||||||||||||.||.:|||||||||||:|||
Zfish    66 IQLFDQWSEADQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPAQGLDHIAENILSFLDA 130

  Fly   111 ESLKSSELVCKEWLRVISEGMLWKKLIERKVRTDSLWRGLAERRNWMQYLFKPRPGQTQRPHSFH 175
            .||.|:|||||||.|||||||||||||||.||||.||:||:||..|.:||||.|..:.. |:|::
Zfish   131 RSLCSAELVCKEWQRVISEGMLWKKLIERMVRTDPLWKGLSERHQWEKYLFKNRTTEVP-PNSYY 194

  Fly   176 RELFPKIMNDIDSIENNWRTGRHMLRRINCRSENSKGVYCLQYDDGKIVSGLRDNTIKIWDRTDL 240
            |.|:|||:.||::||.|||.|||.|:||.||||||||||||||||.||:||||||:|||||:..|
Zfish   195 RSLYPKIIQDIETIEANWRCGRHNLQRIQCRSENSKGVYCLQYDDEKIISGLRDNSIKIWDKQTL 259

  Fly   241 QCVKTLMGHTGSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFNNGMMVT 305
            :|:|.|.||||||||||||::||::|||||||||||||:||::||||||.||||||||.||:|||
Zfish   260 ECLKILTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNSGEVLNTLIHHNEAVLHLRFCNGLMVT 324

  Fly   306 CSKDRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWSTSSCEFVRTLN 370
            ||||||||||||.||::|:||||||||||||||||||:||||||||||||||||||:||||||||
Zfish   325 CSKDRSIAVWDMASPTDISLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLN 389

  Fly   371 GHKRGIACLQYRDRLVVSGSSDNSIRLWDIECGACLRVLEGHEELVRCIRFDTKRIVSGAYDGKI 435
            |||||||||||||||||||||||:||||||||||||||||||||||||||||.||||||||||||
Zfish   390 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 454

  Fly   436 KVWDLVAALDPRAASNTLCLNTLVEHTGRVFRLQFDEFQIVSSSHDDTILIWDFLNFTPNENKTG 500
            |||||.|||||||.::||||.|||||:|||||||||||||:|||||||||||||||.:.|....|
Zfish   455 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVSTNGQTEG 519

  Fly   501 RTPS 504
            |:||
Zfish   520 RSPS 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 29/37 (78%)
F-box-like 89..136 CDD:289689 38/46 (83%)
WD40 <192..495 CDD:225201 261/302 (86%)
WD40 210..488 CDD:238121 242/277 (87%)
WD40 repeat 213..248 CDD:293791 25/34 (74%)
WD40 repeat 254..288 CDD:293791 26/33 (79%)
WD40 repeat 293..330 CDD:293791 30/36 (83%)
WD40 repeat 337..370 CDD:293791 30/32 (94%)
WD40 repeat 376..410 CDD:293791 32/33 (97%)
WD40 repeat 416..459 CDD:293791 36/42 (86%)
WD40 repeat 465..487 CDD:293791 20/21 (95%)
fbxw11bNP_998669.2 Beta-TrCP_D 67..105 CDD:288940 29/37 (78%)
F-box-like 109..156 CDD:289689 38/46 (83%)
WD40 <216..510 CDD:225201 255/293 (87%)
WD40 229..507 CDD:238121 242/277 (87%)
WD40 repeat 232..267 CDD:293791 25/34 (74%)
WD40 repeat 273..307 CDD:293791 26/33 (79%)
WD40 repeat 312..349 CDD:293791 30/36 (83%)
WD40 repeat 356..389 CDD:293791 30/32 (94%)
WD40 repeat 395..429 CDD:293791 32/33 (97%)
WD40 repeat 435..478 CDD:293791 36/42 (86%)
WD40 repeat 484..506 CDD:293791 20/21 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 98 1.000 Domainoid score I7115
eggNOG 1 0.900 - - E1_KOG0281
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 790 1.000 Inparanoid score I495
OMA 1 1.010 - - QHG48038
OrthoDB 1 1.010 - - D150270at33208
OrthoFinder 1 1.000 - - FOG0002886
OrthoInspector 1 1.000 - - otm25435
orthoMCL 1 0.900 - - OOG6_102978
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 1 1.000 - - X2712
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.770

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