DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment slmb and fbxw11a

DIOPT Version :9

Sequence 1:NP_001262802.1 Gene:slmb / 42504 FlyBaseID:FBgn0283468 Length:597 Species:Drosophila melanogaster
Sequence 2:XP_005173126.1 Gene:fbxw11a / 334373 ZFINID:ZDB-GENE-030131-6305 Length:562 Species:Danio rerio


Alignment Length:475 Identity:371/475 - (78%)
Similarity:423/475 - (89%) Gaps:1/475 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 RKKDSSPTYQTERELCFQYFTQWSESGQVDFVEHLLSRMCHYQHGQINAYLKPMLQRDFITLLPI 94
            ||:.|..::..|::||.|.|.|||||.||:|||||::||||||||.||:||||||||||||.||.
Zfish    81 RKRPSQGSFDKEKDLCIQLFDQWSESDQVEFVEHLIARMCHYQHGHINSYLKPMLQRDFITALPA 145

  Fly    95 KGLDHIAENILSYLDAESLKSSELVCKEWLRVISEGMLWKKLIERKVRTDSLWRGLAERRNWMQY 159
            :|||||||||||:|||.||.|:||||:||.||||:||||||||||.||||.||:||:||..|.:|
Zfish   146 RGLDHIAENILSFLDARSLCSAELVCREWQRVISDGMLWKKLIERMVRTDPLWKGLSERHQWEKY 210

  Fly   160 LFKPRPGQTQRPHSFHRELFPKIMNDIDSIENNWRTGRHMLRRINCRSENSKGVYCLQYDDGKIV 224
            |||.|..:.. |:|::..|:|||:.||::||.|||.|||.|:||.||||||||||||||||.||:
Zfish   211 LFKNRTNEVP-PNSYYHSLYPKIIQDIETIEANWRCGRHNLQRIQCRSENSKGVYCLQYDDDKII 274

  Fly   225 SGLRDNTIKIWDRTDLQCVKTLMGHTGSVLCLQYDDKVIISGSSDSTVRVWDVNTGEMVNTLIHH 289
            ||||||:|||||:..|:|:|.|.||||||||||||::||::||||||||||||::||::||||||
Zfish   275 SGLRDNSIKIWDKQSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVSSGEVLNTLIHH 339

  Fly   290 CEAVLHLRFNNGMMVTCSKDRSIAVWDMTSPSEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRT 354
            .||||||||.||:|||||||||||||||.|.::|:||||||||||||||||||:|||||||||||
Zfish   340 NEAVLHLRFCNGLMVTCSKDRSIAVWDMASATDISLRRVLVGHRAAVNVVDFDDKYIVSASGDRT 404

  Fly   355 IKVWSTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNSIRLWDIECGACLRVLEGHEELVRCI 419
            |||||||:|||||||||||||||||||||||||||||||:|||||||||||||||||||||||||
Zfish   405 IKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 469

  Fly   420 RFDTKRIVSGAYDGKIKVWDLVAALDPRAASNTLCLNTLVEHTGRVFRLQFDEFQIVSSSHDDTI 484
            |||.|||||||||||||||||.|||||||.::||||.|||||:|||||||||||||:||||||||
Zfish   470 RFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTI 534

  Fly   485 LIWDFLNFTPNENKTGRTPS 504
            |||||||.:.|....||:||
Zfish   535 LIWDFLNVSSNGQSDGRSPS 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slmbNP_001262802.1 Beta-TrCP_D 47..85 CDD:288940 29/37 (78%)
F-box-like 89..136 CDD:289689 36/46 (78%)
WD40 <192..495 CDD:225201 259/302 (86%)
WD40 210..488 CDD:238121 240/277 (87%)
WD40 repeat 213..248 CDD:293791 25/34 (74%)
WD40 repeat 254..288 CDD:293791 25/33 (76%)
WD40 repeat 293..330 CDD:293791 29/36 (81%)
WD40 repeat 337..370 CDD:293791 30/32 (94%)
WD40 repeat 376..410 CDD:293791 32/33 (97%)
WD40 repeat 416..459 CDD:293791 36/42 (86%)
WD40 repeat 465..487 CDD:293791 20/21 (95%)
fbxw11aXP_005173126.1 Beta-TrCP_D 98..136 CDD:288940 29/37 (78%)
F-box-like 140..187 CDD:289689 36/46 (78%)
WD40 <247..541 CDD:225201 253/293 (86%)
WD40 260..538 CDD:238121 240/277 (87%)
WD40 repeat 263..298 CDD:293791 25/34 (74%)
WD40 repeat 304..338 CDD:293791 25/33 (76%)
WD40 repeat 343..380 CDD:293791 29/36 (81%)
WD40 repeat 387..420 CDD:293791 30/32 (94%)
WD40 repeat 426..460 CDD:293791 32/33 (97%)
WD40 repeat 466..509 CDD:293791 36/42 (86%)
WD40 repeat 515..537 CDD:293791 20/21 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 98 1.000 Domainoid score I7115
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 790 1.000 Inparanoid score I495
OMA 1 1.010 - - QHG48038
OrthoDB 1 1.010 - - D150270at33208
OrthoFinder 1 1.000 - - FOG0002886
OrthoInspector 1 1.000 - - otm25435
orthoMCL 1 0.900 - - OOG6_102978
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R947
SonicParanoid 1 1.000 - - X2712
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.910

Return to query results.
Submit another query.